Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq8 143 2e-29 seq16 102 7e-17 >seq8 Length=7211506 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| |||| ||||||||||||||| || ||| Sbjct 4602859 AGTCCTGTGATGTGTGCGATCATGTAGGTGAGAAGAGCGTAGCTGGCGATGTTGAAAGGC 4602800 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 ||||| || ||||| || | || | |||||| ||||| ||||| ||||| ||||| | Sbjct 4602799 ACCCCCAGACCCATATCAGCCGAGCGCTGGTACAGCTGACACGACAGCTCACCGTCACAG 4602740 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 ||||| |||||||| | || ||||| || || || |||||||| Sbjct 4602739 ACGTAGAACTGACAGAGAGCGTGGCAGGGGGGCAGAGCCATGAG 4602696 Score = 123 bits (136), Expect = 2e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || || ||||||||||||||||| || || || ||||| ||||| || | || |||| Sbjct 4601863 AAGTGTCTCCACTGGAACCCGTAAACGGGCCCGAGGTCCCCCTCCTCTCGGTCGGTGAAG 4601804 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||| ||| ||| ||| |||||||||||||||||||| || || ||||| Sbjct 4601803 CCCAGGTTGTCCAGGAAGGCTCGGGACCCGTTGGCGTCCCAGATCTTCACGCCTTTCTCC 4601744 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || ||||| |||| ||||| ||||| Sbjct 4601743 GACAGCTCCTTGGCATTTGTCGACCC 4601718 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 29886 CTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 29945 ||||||||||||| ||||||| |||||| |||| ||| |||||||| ||| ||||| || Sbjct 4602617 CTTTGGGGTTCCATGCACACATGATGATCCGCCGGTCCTCTGGGTTCTTCTTGATGGTGT 4602558 Query 29946 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 29990 | | | || |||||||| ||||| ||| |||| ||| |||| Sbjct 4602557 CGATCACTTTCTGCAGCTGGTCCACACCCTGTCCCGTGTAATCTG 4602513 >seq16 Length=5321795 Score = 102 bits (112), Expect = 7e-17 Identities = 91/113 (81%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 114279 GATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTT 114338 || ||||| | ||| ||||||||| | ||| | || ||| ||||||| | ||||| | Sbjct 15210 GAACTTTAGGTTCC-TGCTGAGGATGATGTTGATCCGGTCCTTCAGAGGCCGGTTCTTCT 15268 Query 114339 CGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 | |||||||||||||| ||||| || ||||| ||||||||||||||||| ||| Sbjct 15269 CTGGGATGGAGAACCAGGTCTTCCTGCCCATGATCACCACGTTCTGCTTCCCT 15321 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 114042 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTCTGGGAGAAAAATGTCGCACGCAA 114101 |||||||||| || || ||| || |||| | || ||||| || ||||||| | | Sbjct 14241 ACTCTGGCAGCAGGCGGTATTCATCAGGACTGATTTCAGGGAGGAACGTGTCGCAGTCGA 14300 Query 114102 ATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTGTCCCCGGGCTCTCCATGAGCTCC 114160 | ||| || | |||| ||||||||||||||||| |||||||||||||| |||||| Sbjct 14301 ACTGCTTCAGGATTCGAGTCACAAACAGCCTCTTTGTTCCCGGGCTCTCCATCAGCTCC 14359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406147988299678