Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq57 201 8e-47 seq8 154 1e-32 >seq57 Length=2911277 Score = 201 bits (222), Expect = 8e-47 Identities = 238/320 (74%), Gaps = 2/320 (1%) Strand=Plus/Plus Query 68999 CCTACACAGTCCAGAGGGGTCCAAACTGACCATAGGACCCGTTGAGGACACAGAGTATAA 69058 |||| | | |||| | || ||| | |||| ||| | || | || ||||| ||||| || Sbjct 590191 CCTAAATAATCCAAATGGTGCCACATTGACGATATGCCCGCTGGAAGACACGGAGTACAA 590250 Query 69059 AGACAGGCCTGCAGTGGTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGAC-GA 69117 |||| |||| || ||||||||| || | ||||| ||| | || | ||| || || Sbjct 590251 GGACAATCCTGGAGAGGTGAACGGGTGCAGCAAGTTCTATCTTCCTAT-GCCAAGAAAGA 590309 Query 69118 TGCAGGTCATCGGTTATGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATGA 69177 || |||| || ||||||||| ||| |||| ||||| |||||| |||||| ||||||||| Sbjct 590310 TGGAGGTTATTGGTTATGTGGAGGGCACTCTATACCCATGTGATCAGCTTATCCTGATGA 590369 Query 69178 CCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAACT 69237 |||| |||| |||| ||||| |||| || ||||| |||||||| | ||||||| | Sbjct 590370 TATGCGGGGACGGGAAGCTGTACAGCTACGATGGAGATGAGCTGCACGAGGTGGCTTCCA 590429 Query 69238 GTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCATG 69297 | ||| | || | | |||| ||||||| ||| ||||| | | |||||| ||| | | Sbjct 590430 GCCTGCAACATCTACGTGAAGTGGGAATAGACTACCCTGCGTCCAAGAGCTTTTACTACG 590489 Query 69298 GGGAGGCCTTCAAACATATG 69317 |||||||||||||| ||||| Sbjct 590490 GGGAGGCCTTCAAAGATATG 590509 Score = 82.4 bits (90), Expect = 6e-11 Identities = 108/148 (73%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 69163 AGCTTGTCCTGATGACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTGC 69222 |||| || |||||||| || |||||| |||| |||||| |||||| || || ||||||| Sbjct 619330 AGCTCGTGCTGATGACGTGTGAGGACAGGAAGCTGTACGCCTATGATGGGGAGGAGCTGC 619389 Query 69223 ATGTGGTGGCTAACTGTCTGGATCAGATGG--GGGAAGAAGGAATAGCCTATCCTGCATT 69280 ||||||||||| | ||||| ||| | | | |||| |||| | ||||| || Sbjct 619390 ATGTGGTGGCTTTGGGCCTGGACCAGCTCGAACGCAAGA--GAATCGAGTATCCGTCAGA 619447 Query 69281 CCAGAGCTATTATCATGGGGAGGCCTTC 69308 || |||||| | ||| |||||||| Sbjct 619448 TGTGACCTATTACAACGGGCAGGCCTTC 619475 >seq8 Length=7211506 Score = 154 bits (170), Expect = 1e-32 Identities = 133/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| ||||| |||| ||||||||||||||| || || Sbjct 4602859 AGTCCTGTGATGTGTGCGATCATGTAGGTGAGAAGAGCGTAGCTGGCGATGTTGAAAGGC 4602800 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 ||||| || ||||| || |||| | |||||| ||||||||||| ||||| || || | Sbjct 4602799 ACCCCCAGACCCATATCAGCCGAGCGCTGGTACAGCTGACACGACAGCTCACCGTCACAG 4602740 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 ||||| |||||||| | |||||||| || || |||||||||||| Sbjct 4602739 ACGTAGAACTGACAGAGAGCGTGGCAGGGGGGCAGAGCCATGAGG 4602695 Score = 141 bits (156), Expect = 7e-29 Identities = 132/168 (79%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 |||||| |||||||||| || || || ||||| ||||||||||| || || || ||||| Sbjct 4601885 CATGTCTTTGTACTCTGCACCAAAGTGTCTCCACTGGAACCCGTAAACGGGCCCGAGGTC 4601826 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 ||||| || | || ||||||| ||||||| ||| ||| ||| ||||||||||| Sbjct 4601825 CCCCTCCTCTCGGTCGGTGAAGCCCAGGTTGTCCAGGAAGGCTCGGGACCCGTTGGCGTC 4601766 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||||||||| || || ||||| || ||||| |||| ||||| ||||| Sbjct 4601765 CCAGATCTTCACGCCTTTCTCCGACAGCTCCTTGGCATTTGTCGACCC 4601718 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27380 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 27439 ||||||||||||| || |||| |||||| |||| ||| |||||||| ||| ||||| || Sbjct 4602617 CTTTGGGGTTCCATGCACACATGATGATCCGCCGGTCCTCTGGGTTCTTCTTGATGGTGT 4602558 Query 27440 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCT 27483 | | | || |||||||| ||||| ||| |||| ||| ||| Sbjct 4602557 CGATCACTTTCTGCAGCTGGTCCACACCCTGTCCCGTGTAATCT 4602514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369493361147063