Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq80 306 5e-78 seq332 87.8 2e-12 >seq80 Length=2229659 Score = 306 bits (338), Expect = 5e-78 Identities = 1248/1958 (64%), Gaps = 17/1958 (1%) Strand=Plus/Plus Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 ||||| || || || |||||| |||||| || | || | || || || || || Sbjct 1867711 TTCTTCATCTCCTCGCTCCACAGCCCCCTCTCCGTCATGTCTTTCAGCAGGTGGGGGTTG 1867770 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 || || || || || || || | || || || ||||| || || ||||| || | || Sbjct 1867771 ACGATCTGGAACTCCCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCG 1867830 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | || || ||||| |||| || || ||||| || || || ||||| || |||| || Sbjct 1867831 ATGGACTCGTTGTTGCCCAGGATCTGGGCAGTGGACGCCGTGGGCATCGGCGCCAGCAGC 1867890 Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 | || || || | || ||| | ||| || || || || ||||| ||||| || Sbjct 1867891 AGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 1867950 Query 77301 TCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCA 77360 || | ||| ||| | ||||| || || | || | || | || || Sbjct 1867951 TCCGTCGGTGTCTTGCTCCACATGTCGTACTGCAGGACGCCCCTGCTGACGGGGGAGCCT 1868010 Query 77361 TTATATGTTTCATAAGGTCCT---TCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCT 77417 | || || || || || || || | | || || || || ||||| |||| || Sbjct 1868011 TCGTACGTCTCGTAGGGGCCGAGCTCGG---CGGCCAGCTCGCAGCTCGCCTCCAGGGCG 1868067 Query 77418 CCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAAC 77477 |||| || || || || || |||| | ||||| || || || || || ||| Sbjct 1868068 GCGTAGTAGATGGTCTCAAACATCTGGATGTTGAGCAGCTGCGCCTCGGGGCTTTCGAAC 1868127 Query 77478 GGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTA 77537 || ||| | | | || ||||| ||||| || || || ||||| || ||||| || || Sbjct 1868128 GGGTAACGCATCAAGATGAAGGCGTCTGCCAAGCCTTGGACTCCGATTCCAATTGGCCTG 1868187 Query 77538 TGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTA 77597 || | ||| ||||| | | ||||| || | || || || || || || || || || Sbjct 1868188 TGGCGCTTGTTGGACCTCTCGGCTTCGGGGACCGGGTAGTAGTTGATTTCAATGATCTTG 1868247 Query 77598 TTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCA 77657 || || ||| | || | |||||| ||| ||||| || ||| | | | Sbjct 1868248 TTCAGGTTTTTCACGATTACTTTGGTCACAGATGCCAGTTTTTTGAAGTCATAAGTCCGC 1868307 Query 77658 TCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTA 77714 ||| | || ||||||| | ||| || || || ||||||||||| || ||||| | Sbjct 1868308 TCTGGCGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACAAACCGCCACCTCGTCT 1868367 Query 77715 GCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTT 77774 | ||| || | | | ||| || || || || || || ||||| |||||||| || Sbjct 1868368 TGGCTGGTGTACTCCACGACCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTC 1868427 Query 77775 TGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCA 77834 || || |||||||| | ||||| | ||| || || || || |||| || |||||||| Sbjct 1868428 TGCTGATTGCTCTTCCTGTTGCACGCGTCTTTGTAGAGCATGTACGGCGTTCCGGTTTCC 1868487 Query 77835 ATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATCATAGATTTGTATCG 77893 |||| || ||||| || | | ||| | | || ||| || | || || | Sbjct 1868488 GTCTGCGACTCGATGATGGCGTACCAAA-GCTGCTGAGCCTTCACCACCCGCTTCACCCT 1868546 Query 77894 CCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAA 77953 || ||| | || ||| || || ||| ||||| || || ||||| || || | Sbjct 1868547 CCCCTCCTTCTCGTATGTCGTGTAAAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCGAG 1868606 Query 77954 TCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCAT 78013 || || || || | || ||||||| |||||||| | || ||||| ||||| Sbjct 1868607 CCCGGGACACTCGTCGGGACACATCAGAGACCAGTCTTGGTTGCTCTCCACTCGCTTCAT 1868666 Query 78014 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCC 78073 || || || || ||||| || || || || || | || ||| || || || ||||| Sbjct 1868667 GAACAGGTCGGGGATCCACAGGGCGTAGAAGAGGTCCCTGGCTCTCTGCTCCTCTTTTCC 1868726 Query 78074 TGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 78133 || ||||| || || || || || || | | || | ||||| || || || || || Sbjct 1868727 CGTGTTCTTCTTCAGCTCCAGGAATTCAAACACGTCGAAGTGCCACGGCTCCAGGTACAT 1868786 Query 78134 TGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATA 78193 || | |||| || | ||| || || ||||| || | || | || ||||| || || Sbjct 1868787 CGCGAAGGCTCCGGGCCTTTTGTTGCCGCCCTGGTCAACGTAGCGAGCAGTGTTGTTGTA 1868846 Query 78194 AACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCC 78253 |||||||| ||| || | | ||||| || | || || || || | || || || || Sbjct 1868847 AACTCTCAGCATGGGGACCAACCCGTTCGAGTTCCCGTTGGTGCCGGCGATGTAGCTCCC 1868906 Query 78254 ACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGC 78313 |||| | || || | | | || || || || || || || || || || Sbjct 1868907 GGTTGCTCTGATGCAGCTGACCGCGACGCCGATGCCGCCAGCGGATTTGGAAATGAGGGC 1868966 Query 78314 GCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAA 78373 ||| | |||| || ||||| || ||||| || ||||| || ||||| || || || Sbjct 1868967 GCACTGCTTCAGGGTGTCGTAAATGCCCTCGATGCTGTCGTCTTTCATGGCGAGCAGGAA 1869026 Query 78374 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGT 78433 ||||| |||| || | | || || || || || | ||||| || || || || Sbjct 1869027 GCAGCTGGACAGCTGTGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGT 1869086 Query 78434 AAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATG 78493 ||||| || || || || || ||||| || || || || | || |||||| || Sbjct 1869087 GAACCACTTCTCTGACAGCAGGTTGTACGTCTCGATGGCCGCGTCGATGTCCGTCCCGTG 1869146 Query 78494 AATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTAT 78553 || || |||| || | ||| | ||| ||||| || | || || ||| || | Sbjct 1869147 GATCCCAACCGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCCACCTTGCCGTTGAC 1869206 Query 78554 TTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCT 78613 ||| || || || |||| ||| || || ||||| ||||||| || || |||| Sbjct 1869207 CCTCAGCAGATAGGAGCGCTCCAGAGTCTTGAACCCAAAGAAGTTGTAGGAGAAATCTCG 1869266 Query 78614 CTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCATGACAGT 78673 ||||| || || | || || || || |||| | || || || | | Sbjct 1869267 GTCGTAGATTATGGCCGAGTTGAGGCGGTCCTTGTTCTCCAGGACGATGTCGAGCGTCTT 1869326 Query 78674 AGTTGAAATAATAGGAGATCGTACACCATTTTTAG--GATTAACATAGTTAAATAAATCT 78731 | | || || || || || | | || || | || |||||||| | | ||| Sbjct 1869327 CTTGGCGATCATGGGCGA--GTGGCGCTTGTTCAGAGGGTTGACATAGTTGTACAGGTCT 1869384 Query 78732 TCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTT 78791 ||||| || || || || | ||| || || |||||||| || || || || || || ||| Sbjct 1869385 TCCATCACGTCGCTGAACATTTTCTTGGTCTCCTTGTGCAGGTTTGAGACGGCGATCCTT 1869444 Query 78792 GCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCT 78851 || || || || || || || || |||| || || ||||| || || || ||||| Sbjct 1869445 GCGGCGAGGATGGCGTAGTCGGGGTGTTTGGTCGTCAGCGTGGCGGCGATCTCGGCCGCC 1869504 Query 78852 AAAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCG 78911 | | || | ||| | || ||||| || | || | || || || || ||||||| | Sbjct 1869505 AGCGTGTCGAGCTCCACCGTGGTGACACCGCTGTACAAACCCTGGATCACCTTCATGGTG 1869564 Query 78912 ATTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCTA-ATACGAGA 78970 || | | || || ||||| |||| ||||| | || || || |||| || || || Sbjct 1869565 ATCTGAGCCGGGTCCACAAAATCAGAGTTCAGGCTGTAGCA-AAGCTTCTGGATGCGCGA 1869623 Query 78971 TGTGATTTTATCAAATATAACATTCTCCTTGCATCCAT 79008 ||||||||||| || || || ||||| || ||||| Sbjct 1869624 GGTGATTTTATCGAACATGACGCGCTCCTGGCGTCCAT 1869661 >seq332 Length=374033 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 77736 TCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTG 77795 || || || ||||| || ||||||| |||||||| ||||| ||||||||||| | ||| Sbjct 70936 TCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTTTGCTGGTTGCTCTTCCTGTTG 70995 Query 77796 CATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851 || | |||||| || || || | || ||||| ||||| |||| || ||||| || Sbjct 70996 CAGGCGTCCTTGTAGAGCATGTATGGTGTCCCCGTTTCTGTCTGCGACTCGATGAT 71051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694642116034720