Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq80 327 2e-84 >seq80 Length=2229659 Score = 327 bits (362), Expect = 2e-84 Identities = 1255/1958 (64%), Gaps = 17/1958 (1%) Strand=Plus/Plus Query 75656 TTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 75715 ||||| ||||| || |||||| ||||| || | || | || || || || || Sbjct 1867711 TTCTTCATCTCCTCGCTCCACAGCCCCCTCTCCGTCATGTCTTTCAGCAGGTGGGGGTTG 1867770 Query 75716 ACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCC 75775 || || || || || || || | || || || ||||| || || ||||| || | || Sbjct 1867771 ACGATCTGGAACTCCCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCG 1867830 Query 75776 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAAT 75835 | || || ||||| |||| || || ||||| || || || ||||| || |||| || Sbjct 1867831 ATGGACTCGTTGTTGCCCAGGATCTGGGCAGTGGACGCCGTGGGCATCGGCGCCAGCAGC 1867890 Query 75836 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 75895 | || || || | || ||| | ||| || || || || ||||| ||||| || Sbjct 1867891 AGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 1867950 Query 75896 TCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCA 75955 || | ||| ||| | ||||| || || | || |||| | || || Sbjct 1867951 TCCGTCGGTGTCTTGCTCCACATGTCGTACTGCAGGACGCCCCTGCTGACGGGGGAGCCT 1868010 Query 75956 TTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCG 76015 | || || ||||| | ||| || | || || ||||| |||||||| | || || Sbjct 1868011 TCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCG 1868070 Query 76016 TAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGA 76075 || || || || || || |||| | || || ||||| || | || || || || Sbjct 1868071 TAGTAGATGGTCTCAAACATCTGGATGTTGAGCAGCTGCGCCTCGGGGCTTTCGAACGGG 1868130 Query 76076 TAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGT 76135 ||| | | | || || || ||||| | || || ||||| || ||||| || || || Sbjct 1868131 TAACGCATCAAGATGAAGGCGTCTGCCAAGCCTTGGACTCCGATTCCAATTGGCCTGTGG 1868190 Query 76136 CTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTG 76195 | ||| ||||| | || ||||| || | ||||| || || || || || || || || Sbjct 1868191 CGCTTGTTGGACCTCTCGGCTTCGGGGACCGGGTAGTAGTTGATTTCAATGATCTTGTTC 1868250 Query 76196 AGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCT 76255 || ||| | || | |||||| ||| ||||| || ||| | | | ||| Sbjct 1868251 AGGTTTTTCACGATTACTTTGGTCACAGATGCCAGTTTTTTGAAGTCATAAGTCCGCTCT 1868310 Query 76256 ATC---ACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT--TAG 76310 | || |||| || ||||| || || || ||||||||||| || ||||| | | | Sbjct 1868311 GGCGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACAAACCGCCACCTCGTCTTGG 1868370 Query 76311 CATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTT 76370 | ||| || | | | ||||||||| || || || |||||||| || || || || | Sbjct 1868371 C--TGGTGTACTCCACGACCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCT 1868428 Query 76371 GTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAA 76430 | || |||||||| |||| || | ||| || || || | |||| ||||| ||||| Sbjct 1868429 GCTGATTGCTCTTCCTGTTGCACGCGTCTTTGTAGAGCATGTACGGCGTTCCGGTTTCCG 1868488 Query 76431 TCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATTATAGATTTGTATCGC 76489 |||| || ||||| || | | ||| | | || ||| || | | || | | Sbjct 1868489 TCTGCGACTCGATGATGGCGTACCAAA-GCTGCTGAGCCTTCACCACCCGCTTCACCCTC 1868547 Query 76490 TTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAA 76549 ||| | || ||| || || | | ||||| || || ||||| || || | Sbjct 1868548 CCCTCCTTCTCGTATGTCGTGTAAAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCGAGC 1868607 Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609 || ||||| || | |||||||||| ||||| || | || || || ||||| Sbjct 1868608 CCGGGACACTCGTCGGGACACATCAGAGACCAGTCTTGGTTGCTCTCCACTCGCTTCATG 1868667 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669 || || || || ||||| || || || || || | || ||| | || || ||||| Sbjct 1868668 AACAGGTCGGGGATCCACAGGGCGTAGAAGAGGTCCCTGGCTCTCTGCTCCTCTTTTCCC 1868727 Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729 || ||||| || || || ||||| || | | || | ||||| || || || || ||| Sbjct 1868728 GTGTTCTTCTTCAGCTCCAGGAATTCAAACACGTCGAAGTGCCACGGCTCCAGGTACATC 1868787 Query 76730 GCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAA 76789 || | | || || | ||| || || ||||| || | || | |||||||| || ||| Sbjct 1868788 GCGAAGGCTCCGGGCCTTTTGTTGCCGCCCTGGTCAACGTAGCGAGCAGTGTTGTTGTAA 1868847 Query 76790 ACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCA 76849 ||||||| ||| || | | ||||| || | || || || || | || || || || Sbjct 1868848 ACTCTCAGCATGGGGACCAACCCGTTCGAGTTCCCGTTGGTGCCGGCGATGTAGCTCCCG 1868907 Query 76850 CATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 76909 ||| | || || | | | ||| || || || || ||| || || || || Sbjct 1868908 GTTGCTCTGATGCAGCTGACCGCGACGCCGATGCCGCCAGCGGATTTGGAAATGAGGGCG 1868967 Query 76910 CAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAA 76969 || | |||| ||||| || |||||||| || || || || ||||| || || || Sbjct 1868968 CACTGCTTCAGGGTGTCGTAAATGCCCTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAG 1869027 Query 76970 CAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTG 77029 ||||| |||| || | | || || || || || | || || || || || ||| Sbjct 1869028 CAGCTGGACAGCTGTGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGTG 1869087 Query 77030 AACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGA 77089 ||||| || || || || || ||||| || || || | || || || ||| || Sbjct 1869088 AACCACTTCTCTGACAGCAGGTTGTACGTCTCGATGGCCGCGTCGATGTCCGTCCCGTGG 1869147 Query 77090 ATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATT 77149 || || || | || | ||| | ||| ||||| || || || | ||| || | Sbjct 1869148 ATCCCAACCGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCCACCTTGCCGTTGACC 1869207 Query 77150 TTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTT 77209 ||| || || || |||| ||| || || ||||| ||||||| || || |||| Sbjct 1869208 CTCAGCAGATAGGAGCGCTCCAGAGTCTTGAACCCAAAGAAGTTGTAGGAGAAATCTCGG 1869267 Query 77210 TCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCATGACAGTG 77269 ||||| || || |||| || || |||||| | | || || || | | Sbjct 1869268 TCGTAGATTATGGCCGAGTTGAGGCGGTCCTTGTTCTCCAGGACGATGTCGAGCGTCTTC 1869327 Query 77270 GTAGAAATAATTGGAGATCGTATTCCATTTTTAG--GATTAACATAGTTAAATAAGTCTT 77327 | | || || || || || | | || || | || |||||||| | | ||||| Sbjct 1869328 TTGGCGATCATGGGCGA--GTGGCGCTTGTTCAGAGGGTTGACATAGTTGTACAGGTCTT 1869385 Query 77328 CCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAG 77387 |||| |||||||| || | ||| || || |||||||| || || || ||||| || || | Sbjct 1869386 CCATCACGTCGCTGAACATTTTCTTGGTCTCCTTGTGCAGGTTTGAGACGGCGATCCTTG 1869445 Query 77388 CAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAG-GTGGCTGCTATTTCTGCCGCT 77446 | || || || || ||||| || |||| || || ||| ||||| || || || ||||| Sbjct 1869446 CGGCGAGGATGGCGTAGTCGGGGTGTTTGGTCGT-CAGCGTGGCGGCGATCTCGGCCGCC 1869504 Query 77447 AAAGTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCT 77506 | || || | || | || || || ||| | || | || || || || ||||||| Sbjct 1869505 AGCGTGTCGAGCTCCACCGTGGTGACACCGCTGTACAAACCCTGGATCACCTTCATGGTG 1869564 Query 77507 ATTTTGATAGGATCTACAAACTCGGTGTTCAAACCATAACATAATTTTCTA-ATACGAGA 77565 || | || || ||||| || | ||||| | || || || |||| || || || Sbjct 1869565 ATCTGAGCCGGGTCCACAAAATCAGAGTTCAGGCTGTAGCA-AAGCTTCTGGATGCGCGA 1869623 Query 77566 TGTGATTTTATCAAACATGACATTCTCCTTACATCCAT 77603 ||||||||||| |||||||| ||||| | ||||| Sbjct 1869624 GGTGATTTTATCGAACATGACGCGCTCCTGGCGTCCAT 1869661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712907014407360