Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq23 114 3e-20 >seq23 Length=4589928 Score = 114 bits (126), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || || ||||| ||||||||||| |||| | || | |||||| Sbjct 3279565 AGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 3279506 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| |||||||||||||| | | ||| |||||||| || Sbjct 3279505 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 3279446 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | |||| ||| ||| || ||||| || || Sbjct 3279445 TGGATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCAAGGGTGATG 3279389 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| ||||| || |||| |||||| Sbjct 3279388 GTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 3279354 Score = 107 bits (118), Expect = 4e-18 Identities = 164/231 (71%), Gaps = 7/231 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||||||||||| || || || ||||| |||||||| || || | | || Sbjct 3279347 CCTGAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCAGACAGGGT 3279288 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || ||||| ||||| |||||||||||||| | | ||| || Sbjct 3279287 GCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 3279228 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||||| || || || || || || |||| | | |||| ||| || || || Sbjct 3279227 CTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTTGGTTCCACCTC 3279171 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT-TTTAC 152109 ||| || || || || || ||||| || || || |||| |||||| ||||| Sbjct 3279170 AAGGGTGATGGTCTTCCCAGTGAGGGTTTTGACAAAGATCTGCATGTTTAC 3279120 Score = 105 bits (116), Expect = 2e-17 Identities = 161/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||||| || ||||| || ||||| || ||||||||||| || | | || Sbjct 3277383 CCTGAGACGCAGGACCAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 3277324 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| |||||||||||||| | | ||| || Sbjct 3277323 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 3277264 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||||| || || || || || || |||| | | |||| ||| ||| || || Sbjct 3277263 CTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCCACCTC 3277207 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || || ||||| ||||| || |||| |||||| || Sbjct 3277206 CAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCATGTT 3277159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153775370829983