Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq23 152 4e-32 >seq23 Length=4589928 Score = 152 bits (168), Expect = 4e-32 Identities = 194/263 (74%), Gaps = 7/263 (3%) Strand=Plus/Minus Query 44077 TATGTTAATAAAATTACATGATTTTTATTTCATTCCCCCTCTCAGTCTCAACACCAGGTG 44136 || || |||||||| ||||| ||||| | | ||||| ||||| | || |||||||| Sbjct 3279609 TAAGTGAATAAAAT--CATGACTTTTACTGC---CCCCCCCTCAGACGCAGGACCAGGTG 3279555 Query 44137 AAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTT 44196 || ||| || || ||||||||||| |||| || ||| | || ||||||||||| Sbjct 3279554 GAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTT 3279495 Query 44197 CCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTG 44256 ||||||||||||| | |||||| || | || | |||||||| ||| ||||| Sbjct 3279494 GCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGC 3279435 Query 44257 CTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGA 44315 ||||| |||| | |||||||| || |||||||| | || || ||||| || |||| Sbjct 3279434 CTTCAC-GTTCTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTCCCAGTGA 3279376 Query 44316 GGGTCTTCACGAAGATTTGCATG 44338 ||||||| || ||||| |||||| Sbjct 3279375 GGGTCTTGACAAAGATCTGCATG 3279353 Score = 136 bits (150), Expect = 3e-27 Identities = 182/250 (73%), Gaps = 5/250 (2%) Strand=Plus/Minus Query 44093 CATGATTTTTATTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTT 44152 ||||| ||||| | | || || || || | || ||||||||||| || |||||| Sbjct 3277403 CATGACTTTTACTGC---CCGCCCCTGAGACGCAGGACCAGGTGAAGGGTTGACTCCTTC 3277347 Query 44153 TGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAA 44212 ||||||||||| || | || ||| | || ||||||||||| || |||||||||| Sbjct 3277346 TGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGC 3277287 Query 44213 CGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTAT 44271 | |||||| || | || | || ||||| ||| ||||| ||||| |||| | || Sbjct 3277286 CTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC-GTTCTCGAT 3277228 Query 44272 GGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGAT 44331 |||||| || |||||||||| || || ||||| || ||||||||||| || ||||| Sbjct 3277227 GGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACAAAGAT 3277168 Query 44332 TTGCATGATG 44341 |||||| || Sbjct 3277167 CTGCATGTTG 3277158 Score = 107 bits (118), Expect = 1e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || || || || || ||| || || |||||||| || || Sbjct 3279356 CATGCCACCCCTGAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTC 3279297 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| ||||||||||||| | |||||| || | Sbjct 3279296 AGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGG 3279237 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| ||||| |||| | |||| | |||||||| | || Sbjct 3279236 GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCACTTGGTT 3279178 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||| | || || ||||| || |||||||| || || ||||| |||||| Sbjct 3279177 CCACCTCAAGGGTGATGGTCTTCCCAGTGAGGGTTTTGACAAAGATCTGCATG 3279125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359976917572041