Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq54 203 5e-47 seq22 140 5e-28 seq10 118 2e-21 >seq54 Length=3035547 Score = 203 bits (224), Expect = 5e-47 Identities = 211/277 (76%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 8309 CCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCC 8368 |||| |||||| | ||||| || ||| | | ||| | |||||||| | ||| ||| Sbjct 2624933 CCCTGTACGTTGTTGCAGACGAGCTTCTGCAGCGAGGCGGTGTTGACGATGCTGAAACCC 2624874 Query 8369 ACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATG 8428 ||| || |||||||||||||||||||||||| |||||||||||||| || |||| Sbjct 2624873 ACGCTGCCTCCGAAGGTGCTGGGCTTCCAGTACTCCGGGGAGCAGATGGGATTTCCCATT 2624814 Query 8429 AGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTG 8488 ||||| ||||||||||| |||||||||| ||| | ||| |||| ||||||||||||||| Sbjct 2624813 AGGCCCTTGAGGGAGAAAGGAGCCCCCATCTCCACCATGGTCTCCCCGAAGATGGCGTTG 2624754 Query 8489 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAA 8548 || ||||| || ||||||| | |||| ||| |||||||| || || || ||| |||| Sbjct 2624753 GGCCGGGGTTTCTCCACCAGCAGGCCGGGGTAGAGCTCCACTGCATCCACATCTTCGTAC 2624694 Query 8549 AGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 | || || ||||| || || || ||||||| Sbjct 2624693 ATCTCCTCCAGCAATGCAGCCATTTCTTTCTCTCCTG 2624657 Score = 140 bits (154), Expect = 5e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| || ||||| ||||| ||| || || ||| ||||| || ||| ||||| Sbjct 2623269 ATGAGCCGTGTGGTTTGGAAGAGTCTTTCATCGTCCCAGTCTGGGTGAACTTCCTTCAGC 2623210 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 ||||| || || | ||||||||| | |||||| || ||||| ||||||||||| ||||| Sbjct 2623209 ACATCACAAACTCGGTTGTGTTCACGGAGCCATATGGTGGCATACATCATGAGGCCAGGG 2623150 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 ||||||||||||||||| || || ||||| | || | || || || | || || Sbjct 2623149 ACCAGGCCAAAAGCCTCGTGGCCAACAGCGAAGCGTTGAGTGTCTGGGACGTGAGGGGGG 2623090 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGT 9475 ||| ||| | || ||||||||| ||| | |||||||||| || |||| Sbjct 2623089 TAGTGCATCTCGACACCGACGTCTTTAACCAATGGGGGATACACCTCTCCGT 2623038 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/168 (71%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||| || || | ||| || ||||| || || || || || || || | || | Sbjct 2622293 TCACCTACAACTCCCATAGGGGTGGGACAGTCCTGCGGTACAGGCGGAAGGGCGCGTGTG 2622234 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || ||||| || |||||| | |||||||||||| ||| |||||||||| || || | Sbjct 2622233 TAGTAGGACAGGTTGGAGTAGGCTTCCCAGCTTTTGTAACCGTAGTCCGCATTATAAGTT 2622174 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCT--GAGCCAGCAAAAAATA 10073 ||||| || ||||||| | ||||| | || | | || |||||||| Sbjct 2622173 GGAGGACTATCAATCATGTGGGATCGAGCTAGGGGGAAGAAAAAAATA 2622126 >seq22 Length=4639432 Score = 140 bits (154), Expect = 5e-28 Identities = 181/250 (72%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 8301 ACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCC 8360 ||||||||| |||| |||| || || || || | ||| || | |||| ||| | Sbjct 4117064 ACGGACACCACTTGGTGTTGAGGCACACCAGTTTCTTCAGAGTGGCCGTTTTGATGATGC 4117005 Query 8361 CGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGT 8420 ||| ||| || || |||||||||||||||||||||||| | |||||| |||| || Sbjct 4117004 TGAAGCCCGTCTCCCCTCCGAAGGTGCTGGGCTTCCAGTACTCAGGGGAGTTGATGGGGT 4116945 Query 8421 TCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGA 8480 | ||| |||||||| |||||||| ||||| |||| ||| | ||||||||||| || | Sbjct 4116944 TTCCCAGCAGGCCTTTCAGGGAGAAGGGAGCACCCATCTCCACCATGCTCTCACCAAAAA 4116885 Query 8481 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGT 8540 | ||| ||||| | || |||| || || || | || | ||||| ||| || | || Sbjct 4116884 TTAGGTTAGGACGAGTTTTCTCCAGCATGATGCCAGGATAAAACTCCAGAGCGTCAATGT 4116825 Query 8541 CTCCGTAAAG 8550 |||| || || Sbjct 4116824 CTCCATAGAG 4116815 Score = 116 bits (128), Expect = 5e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || ||||||||||||| ||||||||||| || ||||| || ||| ||||| Sbjct 4113210 TCACCAATAATGATGAGTCTGGTGGTCTGGAAAAGCTGCTCATCGTCCCAGGTGGGATGC 4113151 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | || || || |||||||| ||||| |||||||| ||||||||||| Sbjct 4113150 TCCGCCTTCAGGATGTCACAGACTCTGTTGTGCTCCCTCAGCCAGATGGTGGCGTACATG 4113091 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACG 9398 |||| || || || ||||| || ||| ||||||| |||||||| Sbjct 4113090 GTGAGGCCCGGCACGAGGCCGAACATCTCCTGACCGATGGCCAGACG 4113044 >seq10 Length=6656597 Score = 118 bits (130), Expect = 2e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| || |||||||||||||| |||||||| ||| |||||| Sbjct 2053487 TCACCGATGACGATGAGGCGGGTGGTCTGGAACAGCTGCTCGTCGTCCCAGGTGGGATGT 2053546 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| |||||| | || || |||| |||||| ||||||||||| | ||||||||||| Sbjct 2053547 TCTGCTTTCAGGATGTCACAGACCCGGTTGTGCTCCCTGAGCCACAGCGTGGCGTACATT 2053606 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 | ||||| | || || || |||| ||||||| |||| || | |||| Sbjct 2053607 CCCAAACCAGGAAGGAGTCCGAACACCTCCTGACCGATGGCCATCTGCTGCTGGACGGGG 2053666 Query 9412 ACTTCGGGAGGATAGATCAT 9431 || |||||||| ||| |||| Sbjct 2053667 ACCTCGGGAGGGTAGCTCAT 2053686 Score = 113 bits (124), Expect = 6e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 || ||||| | || || || | || || |||||||||||||||||||| | || || Sbjct 2050306 TTCACGATGTCAAAGCCGACTTTGCCTCCAAAGGTGCTGGGCTTCCAGTAATCTGGCGAA 2050365 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| |||| |||||||||| ||||||||||| || || |||| || | ||||| Sbjct 2050366 CAGATGGGGTTCCCCATGAGGCCCTTGAGGGAGAAGGGGGCGCCCATTTCCACCATGCTT 2050425 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || || || | ||| || || | || |||| ||| ||||||| || | || | | Sbjct 2050426 TCTCCAAACACGGCCCCCGGCCGTGTTTTCTCCAGCAATAATCCGGGATAAAATTCAAGA 2050485 Query 8531 GCCTCGACGTCTCCGTAAAG 8550 || |||| ||| ||||| || Sbjct 2050486 GCGTCGATGTCACCGTAGAG 2050505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716849262969920