Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kryptolebias_20marmoratus_20[refseq_20GCF_5F001649575.1_202016-05- 22] 3,073 sequences; 680,366,784 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq23 159 8e-34 >seq23 Length=4589928 Score = 159 bits (176), Expect = 8e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| ||||| || || || |||||||| ||||||||| ||| Sbjct 3279129 CAGATCTTTGTCAAAACCCTCACTGGGAAGACCATCACCCTTGAGGTGGAACCAAGTGAC 3279188 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||| |||||||| || || ||||| || |||||||| Sbjct 3279189 ACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 3279248 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| ||||| || ||||| |||||||| | || || | || |||||| || Sbjct 3279249 AGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTATAACATC 3279308 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 || |||||||| || || |||||||| || | ||||| Sbjct 3279309 CAGAAAGAATCCACCCTCCATCTTGTCCTGCGTCTCAG 3279346 Score = 149 bits (164), Expect = 2e-30 Identities = 159/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || ||||| || || || |||||||| |||||||| || ||| Sbjct 3279357 CAGATCTTTGTCAAGACCCTCACTGGGAAGACCATCACCCTTGAGGTGGA--GCCCAGTG 3279414 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| |||||||| ||||| ||||| || ||||||| Sbjct 3279415 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAGC 3279474 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 3279475 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 3279534 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || || || || || Sbjct 3279535 TCCAGAAAGAATCCACCCTCCACCTGGT 3279562 Score = 134 bits (148), Expect = 3e-26 Identities = 163/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || ||||| || || || |||||||| |||||||| || ||| Sbjct 3277165 CAGATCTTTGTCAAGACCCTCACTGGGAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 3277222 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| |||||||| || || ||||| || ||||||| Sbjct 3277223 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 3277282 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 3277283 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 3277342 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || ||||| || || || || || | ||||| Sbjct 3277343 TCCAGAAGGAGTCAACCCTTCACCTGGTCCTGCGTCTCAG 3277382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203683805717162