Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Labrus_20bergylta_20[refseq_20GCF_5F900080235.1_202016-05-03] 13,466 sequences; 805,480,521 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4673 145 2e-29 seq349 145 2e-29 seq1459 111 4e-19 seq72 89.7 1e-12 >seq4673 Length=16361 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | ||| || ||||| | || ||||||||||| || || ||||| Sbjct 2233 ATGCCTCCCCTCAGACGAAGAACCAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTCG 2292 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || || || || || || | ||| ||||| || Sbjct 2293 GAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCGGGG 2352 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || ||||||||||| ||||| || || || || || | ||| ||||| || || Sbjct 2353 GGGATACCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCC 2412 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || ||||| |||||||| Sbjct 2413 ACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTAACAAAGATCTGCAT 2462 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | || ||||| || || || ||| Sbjct 2038 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 2097 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| ||||| || || ||||||||||||||||| ||||| || || Sbjct 2098 GCAAAGATCAGACGCTGCTGATCGGGGGGGATTCCTTCTTTATCCTGGATCTTGGCCTTG 2157 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||||| || || ||||| || || || ||||| ||||| || || Sbjct 2158 ACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 2217 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 2218 TTAACAAAGATCTGCAT 2234 >seq349 Length=568042 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || ||||||||||| || || ||||| Sbjct 322274 ATGCCTCCCCTCAGACGCAGGACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCG 322215 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || ||||| || ||||| || |||||||| ||||| || Sbjct 322214 GAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGG 322155 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || ||||| || | ||| || || || || Sbjct 322154 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCC 322095 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || || ||||| ||||| || || || ||||| |||||||| Sbjct 322094 ACCTCCAAGGTGATGGTCTTTCCAGTGAGGGTCTTCACAAAGATCTGCAT 322045 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || ||||| Sbjct 322958 ATGCCTCCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 322899 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || ||||||||||| |||||||| ||||| || Sbjct 322898 GAGAGGGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGATCTGGG 322839 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| ||||| || || |||||||| | ||| ||||| || || Sbjct 322838 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCGCTTGGCTCC 322779 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || || || ||||| || || || || || |||||||| Sbjct 322778 ACCTCCAGGGTGATTGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 322729 Score = 136 bits (150), Expect = 9e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || ||||| Sbjct 322046 ATGCCTCCCCTCAGACGCAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 321987 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || ||||| || ||||| || |||||||| || || || Sbjct 321986 GAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGG 321927 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| || ||||| || ||||| || | ||| || || || || Sbjct 321926 GGGATGCCCTCCTTGTCCTGGATTTTTGCCTTGACATTCTCAATGGTGTCACTTGGCTCC 321867 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || ||||| ||||| || || || ||||| ||||||||||| Sbjct 321866 ACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATTTT 321814 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || ||||||||||| || || ||||| Sbjct 326976 ATGCCTCCCCTCAGACGCAGGACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCG 326917 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || |||||||| || |||||||| ||||| || Sbjct 326916 GAGAGGGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCTGGG 326857 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| ||||| || || || || || | ||| || || || || Sbjct 326856 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTTGGCTCC 326797 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||||||||| || || || || || |||||||| Sbjct 326796 ACTTCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATCTGCAT 326747 >seq1459 Length=39823 Score = 111 bits (122), Expect = 4e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || || || || || || || || ||||| |||||||| || || || ||||| ||| Sbjct 13120 GTGGCGTTCGCTGCCGTGGAGGGGATCTTCTTCTCGGGGTCGTTCGCTGCGATCTTCTGG 13061 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| | ||||| ||||| || | || ||||| ||||| |||| ||||| ||| Sbjct 13060 CTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCAGCAGAGAC 13001 Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283 || ||| | |||||||||||||| || Sbjct 13000 GAGGGTCTGCACTGCGACTTCGCCTG 12975 >seq72 Length=1853568 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || ||||| || || || || || || ||||| || || || || || || |||| |||| Sbjct 1652286 GTGGCTTTCGCAGCAGTGGAGGGCATCTTCTTCTCTGGCTCATTCGCTGCCATCTATTGG 1652227 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| ||||| || |||||||| | || | ||| ||||| ||||||||||||| Sbjct 1652226 CTGAAGAAGAGAGGACTAATGCCAGGTCTTACCTACTCCAACGAGCTGATAAGCAGGGAT 1652167 Query 269258 GA 269259 || Sbjct 1652166 GA 1652165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151199745635928