Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Labrus_20bergylta_20[refseq_20GCF_5F900080235.1_202016-05-03] 13,466 sequences; 805,480,521 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq86 407 3e-108 seq5694 259 9e-64 seq1459 156 8e-33 seq80 118 2e-21 seq72 87.8 3e-12 >seq86 Length=1688118 Score = 407 bits (450), Expect = 3e-108 Identities = 904/1349 (67%), Gaps = 28/1349 (2%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || | |||||||||||| ||||| || | ||| ||||| ||||||| || | Sbjct 230588 GTTGACGATCTGAAACTCTCCAGACAGGACTCTGCGGGTGTAGATGTTGCTGGTGTAGGC 230529 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||||| ||| |||||||||| ||||| || ||| || || ||||| || | | Sbjct 230528 CTCGATGGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAGGCGGTGGGCATCGGGGCGAG 230469 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 |||||| |||||||||||||| || | ||| | ||| ||||||||| | Sbjct 230468 CAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAA 230409 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 || | | | | | | || | | |||||||||| ||||||| | ||||||||| Sbjct 230408 CAGGTCGGTGGGCTTCT----TCT-----CCCACATGTCGTACTGCAGAATCCCCTTGCT 230358 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGG-GCCAGCTTACAGCTCT 244388 ||| || || ||||| ||| ||| || ||| || | | ||||||| ||||| Sbjct 230357 GACCGGAGACCCTTCGTAAGTCTCGTACGGGCCGA-GCTCGGCAGCCAGCTCGCAGCTTG 230299 Query 244389 CGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGC 244448 | || ||||||||||||||||| ||||| ||||| |||||| |||||| Sbjct 230298 CCTCAAGGGCGGCGTAGTAGATCGTCTCAAAGATGTGAATGTTCAGCAACTGGGCCTCTG 230239 Query 244449 CGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGC 244508 || || ||| | ||| | |||||| |||| |||| ||||| |||||||| | Sbjct 230238 GGCTTTCAAACGGGTACCGCATGAGGATGAAGGCGTCAGCCAAACCCTGAACGCCGATAC 230179 Query 244509 CGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGT 244568 | || || ||||| |||||||| || | ||| || || || || || |||||| | Sbjct 230178 CAATCGGCCTGTGACGCTTGTTTGACTTCTCGGCCTCCGGTACAGGATAGAAGTTGATCT 230119 Query 244569 CGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGT 244628 |||| | |||||| | ||| | ||| | | |||||| || || || ||||| Sbjct 230118 CGATGATCTTGTTCAAGTTCTTGACGATAACTTTGGTGACGTCAGCTAGTTTCTTAAAGT 230059 Query 244629 CGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGG 244688 | | || ||| | || ||||| || || |||||| || | | | Sbjct 230058 CAAA-----AG---TCCGCTCAGA-GGTGA------CATACATGTTGAGTGCAATGGAAG 230014 Query 244689 CCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGT 244748 |||| || || ||||| || || || | ||||||| | || || || |||||||||| Sbjct 230013 CCAGATTACAAACGGCTACTTCATCATGGCTGGTGTATTCAACGATTTCTGTGCAGAGGT 229954 Query 244749 TACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGT 244808 | |||| ||||||||||||||| | ||| || |||| ||| |||||||||||| || | Sbjct 229953 TGCTGCTCTTGATGGTGCCCAGATTCTGATGGTTGGTCTTTCTGTTGCAGGCGTCTTTAT 229894 Query 244809 AGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCC 244868 | |||||| | || || || || ||||| ||| || || ||| | | | Sbjct 229893 AAAGCATGTATGGAGTACCTGTTTCTGTCTGGGACTCGATGATTGCGTGCCACACCTGCT 229834 Query 244869 TAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGA 244928 ||| || ||| | || | ||||| ||| || |||||| || ||| | Sbjct 229833 GAGCTTTCACCACACGCTTCACCCTCCCCTCCTTCTCATATGAGGTGTAAAGCTTCTCAA 229774 Query 244929 ACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACT 244988 |||| |||||| ||| || || || |||||| || ||||| ||| ||| | Sbjct 229773 ACTCCTCCCCCCAGCACTCATCCAGCCCAGGGCACTCATTAGGACACATCAGAGACCAGT 229714 Query 244989 CGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGT 245048 | | | || || || | |||||| |||||||||||||| | ||| | |||||||| Sbjct 229713 CCTGGTTGCTCTCTACTCTTTTCATGAACAGGTCGGGGATCCACATGGCGTAGAAGAGGT 229654 Query 245049 CCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGT 245108 | |||| |||||||| ||| || ||||||||| |||||||||| |||||||| || | Sbjct 229653 CTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAAGAAGTCAAACACAT 229594 Query 245109 CGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGT 245168 | | |||||||||||| | ||| | |||| ||| ||||||| ||||| || ||||||| Sbjct 229593 CAAAGTGCCAGGGCTCAAGGTACATGGCGAAGGCTCCGGGCCTTTTGTTTCCACCCTGGT 229534 Query 245169 CCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGC 245228 | || | | | |||| | | | ||| | || || | ||||| |||| || Sbjct 229533 CGACATAACGCGCCGTGTTGTTGTACACTCTCAGCATGGGGACAAGACCGTTTGAGTTGC 229474 Query 245229 CGTTGGTGCCCTTGATGTAGGCGCCCT-TGCCCCTGAGGTTGCTGATGGACATGCCTAGT 245287 | || ||||| ||||| || |||| | || | ||||| | | ||| | | Sbjct 229473 CATTTGTGCCGGCAATGTA-GCTCCCTGTCGATCTAATACAGCTGACTGCTACGCCGATT 229415 Query 245288 CCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATG 245347 || || || ||||||||||||||||| ||| | ||||| ||||| || ||| Sbjct 229414 CCTCCAGCTGATTTGGAGATGAGGGCGCACTGCTTCAGAGTGTCATAAATGCCTTCAATG 229355 Query 245348 CTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAG 245407 ||||| |||||| ||||| |||||| ||||||||| ||| || | | | | Sbjct 229354 CTGTCGTCTTTCATGGCTAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCA 229295 Query 245408 TTGAACAGAGTGGGGCTGGCGTGGGTAAA 245436 ||||| || || || |||||| || || Sbjct 229294 TTGAAGAGGGTAGGTGAGGCGTGTGTGAA 229266 >seq5694 Length=14491 Score = 259 bits (286), Expect = 9e-64 Identities = 524/774 (68%), Gaps = 3/774 (0%) Strand=Plus/Plus Query 244664 ACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTG 244723 ||| || |||||| || | | ||||| || || ||||| || || || | ||||| Sbjct 57 ACATACATGTTGAGTGCAATGGAAGCCAGATTACAAACGGCTACTTCATCATGGCTGGTG 116 Query 244724 TACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTG 244783 || | || || || ||||||||||| |||| ||||||||||||||| | ||| || ||| Sbjct 117 TATTCAACGATTTCTGTGCAGAGGTTGCTGCTCTTGATGGTGCCCAGATTCTGATGGTTG 176 Query 244784 GACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCG 244843 | ||| |||||||||||| || || |||||| | || || || || ||||| Sbjct 177 GTCTTTCTGTTGCAGGCGTCTTTATAAAGCATGTATGGAGTACCTGTTTCTGTCTGGGAC 236 Query 244844 ACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCC 244903 ||| || || ||| | | | ||| || ||| | || | ||||| | Sbjct 237 TCGATGATTGCGTGCCACACCTGCTGAGCTTTCACCACACGCTTCACCCTCCCCTCCTTC 296 Query 244904 TCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCAC 244963 || || |||||| || ||| ||||| |||||| ||| || || || |||||| Sbjct 297 TCATATGAGGTGTAAAGCTTCTCAAACTCCTC-CCCCAGCACTCATCCAGCCCAGGGCAC 355 Query 244964 GACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCG 245023 || ||||| ||| ||| || | | || || || | |||||| |||||| Sbjct 356 TCATTAGGACACATCAGAGACCAGTCCTGGTTGCTCTCTACTCTTTTCATGAACAGGTCG 415 Query 245024 GGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTC 245083 |||||||| | ||| | ||||||||| |||| |||||||| ||| || ||||||||| Sbjct 416 GGGATCCACATGGCGTAGAAGAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTC 475 Query 245084 CTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCG 245143 |||||||||| |||||||| || || | |||||||||||| | ||| | |||| ||| Sbjct 476 TTCAGCTCCAAGAAGTCAAACACATCAAAGTGCCAGGGCTCAAGGTACATGGCGAAGGCT 535 Query 245144 CCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGG 245203 ||||||| ||||| || |||||||| || | | | |||| | | | ||| Sbjct 536 CCGGGCCTTTTGTTTCCACCCTGGTCGACATAACGCGCCGTGTTGTTGTACACTCTCAGC 595 Query 245204 GTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCT-TGCCCCT 245262 | || || | ||||| |||| ||| || ||||| ||||| || |||| | || Sbjct 596 ATGGGGACAAGACCGTTTGAGTTGCCATTTGTGCCGGCAATGTA-GCTCCCTGTCGATCT 654 Query 245263 GAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTT 245322 | ||||| | | ||| | ||| || || ||||||||||||||||| ||| Sbjct 655 AATACAGCTGACTGCTACGCCGATTCCTCCAGCTGATTTGGAGATGAGGGCGCACTGCTT 714 Query 245323 GATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGA 245382 | ||||| ||||| || |||||||| |||||| ||||| |||||| ||| Sbjct 715 CAGAGTGTCATAAATGCCTTCAATGCTGTCGTCTTTCATGGCTAGCAGGAAGCAGCTGGA 774 Query 245383 CAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAA 245436 |||||| ||| || | | | | ||||| || || || |||||| || || Sbjct 775 CAGCTGTGGCCTGTTGGTTCCTGCATTGAAGAGGGTAGGTGAGGCGTGTGTGAA 828 >seq1459 Length=39823 Score = 156 bits (172), Expect = 8e-33 Identities = 167/220 (76%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 42720 GCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAG 42779 ||||| ||||| |||||||||||||| | ||||| | ||||||||||| ||| || Sbjct 13108 GCCGTGGAGGGGATCTTCTTCTCGGGGTCGTTCGCTGCGATCTTCTGGCTGAAGAAGCGC 13049 Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 | ||||||||| || |||||||| ||||| || |||||||| |||||||| ||||| Sbjct 13048 GGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCAGCAGAGACGAGGGTCTGCAC 12989 Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGG 42899 | ||||| ||||||||| ||||| | ||||| | |||| || || ||||| | Sbjct 12988 TGCGACTTCGCCTGCCTCATGTTC---AAACACCTGCAGAACAAACCGTCTGAGGAGACG 12932 Query 42900 GTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGG 42939 ||| | ||||||| | | ||||||||||||||| ||| Sbjct 12931 GTCAAGAGCATCATCCAGAACGCCGTGGAGATCGAGCAGG 12892 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||| || ||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 12313 CCCGTTTGACTTCATGGAGAACATCTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAGCG 12254 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 12253 TGTTGGCGAGTACCAG 12238 >seq80 Length=1733396 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||||||||||||||| || || | |||| ||||| ||||||| || ||||| ||| Sbjct 120979 ACCTGAAACTCTCCCGAGAGTACCCTGCGCGTGTAGATGTTGCTGGTGTAAGGCTCAATG 121038 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||||||||| ||||| || ||| || || ||||| || | || |||||| Sbjct 121039 GACTCATTGTTGCCCAGGATCTGGGCAGTGGAAGCTGTGGGCATTGGGGCCAGGAGCAGA 121098 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||||||||| |||||||| Sbjct 121099 CTGTTCCTCACACCGTGCCT 121118 Score = 102 bits (112), Expect = 2e-16 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||||| ||||||||| ||||| ||||| || |||||||||||||||| | ||| || Sbjct 121976 GTGTACTCGACAATCTCTGTGCACAGGTTGCTAGACTTGATGGTGCCCAGATTCTGCTGG 122035 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 ||| ||| |||||| |||||||||||||||||| Sbjct 122036 TTGCTCTTCCTGTTGCATGCGTCCTTGTAGAGCATG 122071 >seq72 Length=1853568 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 || || ||| | || || || || | || || ||||||||||||||||| ||| | ||| Sbjct 1652301 TTAGGGGAGCGACTTGTGGCTTTCGCAGCAGTGGAGGGCATCTTCTTCTCTGGCTCATTC 1652242 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 || |||||| ||||| ||| ||| ||| | ||||| || || |||| ||| ||||| Sbjct 1652241 GCTGCCATCTATTGGCTGAAGAAGAGAGGACT-AATGCCAGGTCTTACCTACTCCAACGA 1652183 Query 42812 ACTCATCAGCAGGGACGAGG 42831 || || |||||||| |||| Sbjct 1652182 GCTGATAAGCAGGGATGAGG 1652163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944180244104160