Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Labrus_20bergylta_20[refseq_20GCF_5F900080235.1_202016-05-03] 13,466 sequences; 805,480,521 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5694 219 5e-52 seq86 217 2e-51 seq1459 84.2 2e-11 seq80 84.2 2e-11 >seq5694 Length=14491 Score = 219 bits (242), Expect = 5e-52 Identities = 619/948 (65%), Gaps = 3/948 (0%) Strand=Plus/Plus Query 47865 ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTA 47924 ||| || | || ||||| || || || |||||||| || ||||| |||| | | || Sbjct 57 ACATACATGTTGAGTGCAATGGAAGCCAGATTACAAACGGCTACTTCATCATGGCTGGTG 116 Query 47925 TATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTA 47984 |||| | ||||| | || || || | | ||||| || |||| ||| ||||| || Sbjct 117 TATTCAACGATTTCTGTGCAGAGGTTGCTGCTCTTGATGGTGCCCAGATTCTGATGGTTG 176 Query 47985 TTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGAT 48044 | |||| || ||||| || |||||||| | || || || |||||| |||| || Sbjct 177 GTCTTTCTGTTGCAGGCGTCTTTATAAAGCATGTATGGAGTACCTGTTTCTGTCTGGGAC 236 Query 48045 TCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACA-GCTCTAGCTTTATTATCATG 48103 || ||||| | | ||| || | ||| || | ||| ||| | | | || | Sbjct 237 TCGATGATTGCGTGCCACACCTGCTGAGCTTTCACCACACGCTTCACCCTCCCC-TCCTT 295 Query 48104 TTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACA 48163 || ||| || || | ||||||||| || ||||| ||| | ||| | |||||| || Sbjct 296 CTCATATGAGGTGTAAAGCTTCTCAAACTCCTCCCCCAGCAC-TCATCCAGCCCAGGGCA 354 Query 48164 TTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATC 48223 |||||||||||||||| ||||| |||| | | | |||||| |||| || | || Sbjct 355 CTCATTAGGACACATCAGAGACCAGTCCTGGTTGCTCTCTACTCTTTTCATGAACAGGTC 414 Query 48224 TGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCT 48283 || ||||| | || || | || || | ||| | || || || || | ||| | Sbjct 415 GGGGATCCACATGGCGTAGAAGAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTT 474 Query 48284 TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTAC 48343 || || || | ||||| | | |||| ||||| || || | || || || | | Sbjct 475 CTTCAGCTCCAAGAAGTCAAACACATCAAAGTGCCAGGGCTCAAGGTACATGGCGAAGGC 534 Query 48344 ACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAA 48403 || || | ||| || || || || || | ||| | || || ||||| || ||||| | Sbjct 535 TCCGGGCCTTTTGTTTCCACCCTGGTCGACATAACGCGCCGTGTTGTTGTACACTCTCAG 594 Query 48404 CATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCT 48463 ||| ||||||| ||| ||||| | ||||| || || | ||| || || || | | ||| Sbjct 595 CATGGGGACAAGACCGTTTGAGTTGCCATTTGTGCCGGCAATGTAGCTCCCTGTCGATCT 654 Query 48464 TATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTT 48523 ||| || | || | || || || || || ||| || || || || ||| | || Sbjct 655 AATACAGCTGACTGCTACGCCGATTCCTCCAGCTGATTTGGAGATGAGGGCGCACTGCTT 714 Query 48524 AAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGA 48583 || || |||||||| ||||| || || || ||| |||| || || || || || || Sbjct 715 CAGAGTGTCATAAATGCCTTCAATGCTGTCGTCTTTCATGGCTAGCAGGAAGCAGCTGGA 774 Query 48584 CATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTT 48643 || || || ||||||| ||| || | || || || || || | ||||| || Sbjct 775 CAGCTGTGGCCTGTTGGTTCCTGCATTGAAGAGGGTAGGTGAGGCGTGTGTGAACCACTT 834 Query 48644 CTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTAT 48703 ||| || | || || || || || || | | |||||| || ||| || || || | Sbjct 835 CTCAGACAGCAGGTTGTAGGTCTCGATGGCTGCATCTATGTCGGATTTGTGGATTCCGAC 894 Query 48704 AGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAG 48763 ||| || | ||| | ||| | || ||||| ||| | | ||| || || |||| || Sbjct 895 AGAAACTCTCATCAGCATGTGCTGTGGTCTCTCAGCCACTTTTCCGTTAATCTTCAGCAG 954 Query 48764 ATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 48811 || || |||| || || || || || ||||||| || ||||| Sbjct 955 GTAGGAGCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAGTC 1002 >seq86 Length=1688118 Score = 217 bits (240), Expect = 2e-51 Identities = 620/949 (65%), Gaps = 4/949 (0%) Strand=Plus/Minus Query 47865 ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTA 47924 ||| || | || ||||| || || || |||||||| || ||||| |||| | | || Sbjct 230038 ACATACATGTTGAGTGCAATGGAAGCCAGATTACAAACGGCTACTTCATCATGGCTGGTG 229979 Query 47925 TATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTA 47984 |||| | ||||| | || || || | | ||||| || |||| ||| ||||| || Sbjct 229978 TATTCAACGATTTCTGTGCAGAGGTTGCTGCTCTTGATGGTGCCCAGATTCTGATGGTTG 229919 Query 47985 TTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGAT 48044 | |||| || ||||| || |||||||| | || || || |||||| |||| || Sbjct 229918 GTCTTTCTGTTGCAGGCGTCTTTATAAAGCATGTATGGAGTACCTGTTTCTGTCTGGGAC 229859 Query 48045 TCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACA-GCTCTAGCTTTATTATCATG 48103 || ||||| | | ||| || | ||| || | ||| ||| | | | || | Sbjct 229858 TCGATGATTGCGTGCCACACCTGCTGAGCTTTCACCACACGCTTCACCCTCCCC-TCCTT 229800 Query 48104 TTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATA-CACATTATCTAACCCAGGAC 48162 || ||| || || | ||||||||| || ||||| | ||| | ||| | |||||| | Sbjct 229799 CTCATATGAGGTGTAAAGCTTCTCAAACTCCTCCCCCCAGCAC-TCATCCAGCCCAGGGC 229741 Query 48163 ATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATAT 48222 | |||||||||||||||| ||||| |||| | | | |||||| |||| || | | Sbjct 229740 ACTCATTAGGACACATCAGAGACCAGTCCTGGTTGCTCTCTACTCTTTTCATGAACAGGT 229681 Query 48223 CTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCC 48282 | || ||||| | || || | || || | ||| | || || || || | ||| Sbjct 229680 CGGGGATCCACATGGCGTAGAAGAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCT 229621 Query 48283 TTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTA 48342 | || || || | ||||| | | |||| ||||| || || | || || || | Sbjct 229620 TCTTCAGCTCCAAGAAGTCAAACACATCAAAGTGCCAGGGCTCAAGGTACATGGCGAAGG 229561 Query 48343 CACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTA 48402 | || || | ||| || || || || || | ||| | || || ||||| || ||||| | Sbjct 229560 CTCCGGGCCTTTTGTTTCCACCCTGGTCGACATAACGCGCCGTGTTGTTGTACACTCTCA 229501 Query 48403 ACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTC 48462 ||| ||||||| ||| ||||| | ||||| || || | ||| || || || | | || Sbjct 229500 GCATGGGGACAAGACCGTTTGAGTTGCCATTTGTGCCGGCAATGTAGCTCCCTGTCGATC 229441 Query 48463 TTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTT 48522 | ||| || | || | || || || || || ||| || || || || ||| | | Sbjct 229440 TAATACAGCTGACTGCTACGCCGATTCCTCCAGCTGATTTGGAGATGAGGGCGCACTGCT 229381 Query 48523 TAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAG 48582 | || || |||||||| ||||| || || || ||| |||| || || || || || | Sbjct 229380 TCAGAGTGTCATAAATGCCTTCAATGCTGTCGTCTTTCATGGCTAGCAGGAAGCAGCTGG 229321 Query 48583 ACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATT 48642 ||| || || ||||||| ||| || | || || || || || | ||||| | Sbjct 229320 ACAGCTGTGGCCTGTTGGTTCCTGCATTGAAGAGGGTAGGTGAGGCGTGTGTGAACCACT 229261 Query 48643 TCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTA 48702 |||| || | || || || || || || | | |||||| || ||| || || || | Sbjct 229260 TCTCAGACAGCAGGTTGTAGGTCTCGATGGCTGCATCTATGTCGGATTTGTGGATTCCGA 229201 Query 48703 TAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAA 48762 ||| || | ||| | ||| | || ||||| ||| | | ||| || || |||| | Sbjct 229200 CAGAAACTCTCATCAGCATGTGCTGTGGTCTCTCAGCCACTTTTCCGTTAATCTTCAGCA 229141 Query 48763 GATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 48811 | || || |||| || || || || || ||||||| || ||||| Sbjct 229140 GGTAGGAGCGCTCCAGGGTCTTGAAGCCGAAGAAGTTGTAGGAGAAGTC 229092 >seq1459 Length=39823 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002 || ||||| ||||| | || || || || || || || ||||||||||| || |||| Sbjct 12957 AGGTGTTTGAACATGAGGCAGGCGAAGTCGCAGTGCAGACCCTCGTCTCTGCTGATCAGC 13016 Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 || || || || || | || |||||||| || | || || | |||||| || | ||| Sbjct 13017 TCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCGCGCTTCTTCAGCCAGAAGATCGCAGCG 13076 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCC 19118 || || || || ||||| || || || || || || || || || | || ||||| Sbjct 13077 AACGACCCCGAGAAGAAGATCCCCTCCACGGCAGCGAACGCCACGACTCGCTCTCC 13132 >seq80 Length=1733396 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||||||||| || |||| ||| || | || || | ||||||||| | Sbjct 120500 TCCAACCATAGAAATGCATGCTGGTTAGTTTGCCGTAGTTTGGCTCAGCAATATGAATGT 120559 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | || || || ||||| ||||| | || || | ||| |||||||| | | | | | Sbjct 120560 TGAGGGACTGGCTCTGGTCAATGTAAGCGCCGCGATCTGCTGCCATCTTCAGGACAGTCT 120619 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA 47220 | |||| || ||||| ||||||||||| | || || | || || |||| Sbjct 120620 TCTGTGAGATTTCCCACACTGTTTTATACAGCTGCTTCAAATCCTCAGGGA 120670 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47958 TTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATA 48017 ||||| || |||| ||| || || || | |||| |||||||||||||| ||||| Sbjct 122012 TTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCATGCGTCCTTGTAGAGCATG 122071 Query 48018 AAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAA 48063 | ||||| ||||||||| ||||||| |||||||| | | ||||| Sbjct 122072 TATGGTGTACCAGTTTCTGTCTGAGACTCAATGATGGCATGCCAAA 122117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562014183036240