Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Labrus_20bergylta_20[refseq_20GCF_5F900080235.1_202016-05-03] 13,466 sequences; 805,480,521 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq86 214 3e-50 seq5694 181 2e-40 seq1459 154 3e-32 seq72 87.8 3e-12 seq80 86.0 1e-11 >seq86 Length=1688118 Score = 214 bits (236), Expect = 3e-50 Identities = 569/852 (67%), Gaps = 32/852 (4%) Strand=Plus/Minus Query 221357 ACCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGC---CTGGGCGCAAGAC 221413 |||||| ||| ||||| | |||||| || ||| || ||||| | | |||| | Sbjct 230356 ACCGGAGACCCTTCGTAAGTCTCGTACGGGCCG---AGCTCGGCAGCCAGCTCGCA-GCT 230301 Query 221414 TGCGTCA-GGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTC 221472 ||| ||| |||| |||| |||||| ||||||||||| |||| || || |||||| Sbjct 230300 TGCCTCAAGGGCGGCGTAGTAGATCGTCTCAAAGATGTGAATGTTCAGCAACTGGGCCTC 230241 Query 221473 GGGAGAAGTGAAGGGCATAC-GCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGA 221531 || | | || | ||| ||| | ||| |||| |||| ||||| || |||| Sbjct 230240 TGG-GCTTTCAAACGGGTACCGCATGAGGATGAAGGCGTCAGCCAAACCCTGAACGCCGA 230182 Query 221532 TACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGA 221591 |||| || |||||||| | | |||| || | || || || || ||||| ||||||| Sbjct 230181 TACCAATCGGCCTGTGACGCTTGTTTGACTTCTCGGCCTCCGGTACAGGATAGAAGTTGA 230122 Query 221592 CGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGT 221651 ||||| | ||||| | |||| ||| ||||| || || | || |||| Sbjct 230121 TCTCGATGATCTTGTTCAAGTTCTTGACGATAACTTTGGTGACGTCAGCTAGTTTCTTAA 230062 Query 221652 GATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711 | | || || || ||| || |||| | ||| | ||| || |||| | Sbjct 230061 -AGTCAA----AAGTC--CGC--TCA--GAGGTG----ACATACATGTTGAGTGCAATGG 230017 Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGA 221771 ||||| ||||| ||||| || || || | | |||| || | | ||| ||||| |||| Sbjct 230016 AAGCCAGATTACAAACGGCTACTTCATCATGGCTGGTGTATTCAACGATTTCTGTGCAGA 229957 Query 221772 GGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCT 221831 ||||||||| ||||||||| ||||| | | || || | ||| | ||| ||||| | Sbjct 229956 GGTTGCTGCTCTTGATGGTGCCCAGATTCTGATGGTTGGTCTTTCTGTTGCAGGCGTCTT 229897 Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891 | || ||||| | ||| || || || ||| | | | | || || ||| | | Sbjct 229896 TATAAAGCATGTATGGAGTACCTGTTTCTGTCTGGGACTCGATGATTGCGTGCCACACCT 229837 Query 221892 CTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGC 221950 ||| || ||||| | ||| || ||||| ||| ||||| ||| || ||| Sbjct 229836 G-CTGAGCTTTCACCACACGCTTCACCCTCCCCTC---CTTCTCATATGAGGTGTAAAGC 229781 Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGA 222010 | ||||||| || || | ||| ||||| || || ||| |||||||||||| Sbjct 229780 TTCTCAAACTCCTCCCCCCAGCACTCATCCAGCCCAGGGCACTCATTAGGACACATCAGA 229721 Query 222011 CTCCAGTGCTTGTTG-TCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069 ||||| || |||| ||| | || || | |||||| ||||| |||||||||| || | Sbjct 229720 GACCAGTCCTGGTTGCTCTCT-ACTCTTTTCATGAACAGGTCGGGGATCCACATGGCGTA 229662 Query 222070 AAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTC 222129 ||||| ||||||| | |||||||||| || |||| ||| |||| ||||| || || Sbjct 229661 GAAGAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAAGAAGTC 229602 Query 222130 AAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCC 222189 ||| | ||| |||||| ||||| || || | ||| | || ||||| | ||||| || Sbjct 229601 AAACACATCAAAGTGCCAGGGCTCAAGGTACATGGCGAAGGCTCCGGGCCTTTTGTTTCC 229542 Query 222190 ACCCTGATCCAC 222201 |||||| || || Sbjct 229541 ACCCTGGTCGAC 229530 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||||| || |||| || ||| |||| ||| | |||| || || ||| || | Sbjct 230639 CATCTCCTCGCTCCACAGCCCCTTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGAT 230580 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 || || ||||| || || || || | ||| | ||| ||| | | |||||| Sbjct 230579 CTGAAACTCTCCAGACAGGACTCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGA 230520 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||||||||||||||||||||| || ||| |||||||||||| || || | |||||| || Sbjct 230519 CTCGTTGTTGCCCAGGATCTGTGCGGTGGAGGCGGTGGGCATCGGGGCGAGCAGCAGGCT 230460 Query 221245 GTT 221247 ||| Sbjct 230459 GTT 230457 >seq5694 Length=14491 Score = 181 bits (200), Expect = 2e-40 Identities = 348/506 (69%), Gaps = 8/506 (2%) Strand=Plus/Plus Query 221698 GTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTAT 221757 ||| || |||| | ||||| ||||| ||||| || || || | | |||| || | | Sbjct 65 GTTGAGTGCAATGGAAGCCAGATTACAAACGGCTACTTCATCATGGCTGGTGTATTCAAC 124 Query 221758 GATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCG 221817 ||| ||||| ||||||||||||| ||||||||| ||||| | | || || | ||| | Sbjct 125 GATTTCTGTGCAGAGGTTGCTGCTCTTGATGGTGCCCAGATTCTGATGGTTGGTCTTTCT 184 Query 221818 ATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAAT 221877 ||| ||||| || || ||||| | ||| || || || ||| | | | | || Sbjct 185 GTTGCAGGCGTCTTTATAAAGCATGTATGGAGTACCTGTTTCTGTCTGGGACTCGATGAT 244 Query 221878 CTTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCAT 221936 || ||| | | ||| || ||||| | ||| || ||||| ||| |||| Sbjct 245 TGCGTGCCACACCTG-CTGAGCTTTCACCACACGCTTCACCCTCCCCTC---CTTCTCAT 300 Query 221937 ACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGG 221996 | ||| || ||| | ||||||| || || | | || ||||| || || ||| Sbjct 301 ATGAGGTGTAAAGCTTCTCAAACTCCTCCCCCAGCAC-TCATCCAGCCCAGGGCACTCAT 359 Query 221997 CGGGACACATCAGACTCCAGTGCTTGTTG-TCTTTGACCCTCTGCATGAAGAGGTCCGGG 222055 |||||||||||| ||||| || |||| ||| | || || | |||||| ||||| ||| Sbjct 360 TAGGACACATCAGAGACCAGTCCTGGTTGCTCTCT-ACTCTTTTCATGAACAGGTCGGGG 418 Query 222056 ATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTC 222115 ||||||| || | ||||| ||||||| | |||||||||| || |||| ||| || Sbjct 419 ATCCACATGGCGTAGAAGAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTC 478 Query 222116 AGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCG 222175 || ||||| || ||||| | ||| |||||| ||||| || || | ||| | || ||| Sbjct 479 AGCTCCAAGAAGTCAAACACATCAAAGTGCCAGGGCTCAAGGTACATGGCGAAGGCTCCG 538 Query 222176 GGTCGCTTGTTGCCACCCTGATCCAC 222201 || | ||||| |||||||| || || Sbjct 539 GGCCTTTTGTTTCCACCCTGGTCGAC 564 >seq1459 Length=39823 Score = 154 bits (170), Expect = 3e-32 Identities = 181/244 (74%), Gaps = 3/244 (1%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| | || || || ||||| |||||||| ||||| ||| || ||||| || Sbjct 13132 GGAGAGCGAGTCGTGGCGTTCGCTGCCGTGGAGGGGATCTTCTTCTCGGGGTCGTTCGCT 13073 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 || ||||||||||| ||| || || |||||||| ||| ||| ||||||||||| Sbjct 13072 GCGATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTG 13013 Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTG 26052 |||||||| ||||||||||| ||| | || || |||||||| | | || ||| || Sbjct 13012 ATCAGCAGAGACGAGGGTCTGCACTGCGACTTCGCCTGCCTCATGTTCA---AACACCTG 12956 Query 26053 CTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAG 26112 | ||||||| ||| | ||||| ||| | || |||||| | | || |||||||||||| Sbjct 12955 CAGAACAAACCGTCTGAGGAGACGGTCAAGAGCATCATCCAGAACGCCGTGGAGATCGAG 12896 Query 26113 AAGG 26116 ||| Sbjct 12895 CAGG 12892 >seq72 Length=1853568 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || || ||||| || || || || || || |||||||||||||| ||| || || || Sbjct 1652301 TTAGGGGAGCGACTTGTGGCTTTCGCAGCAGTGGAGGGCATCTTCTTCTCTGGCTCATTC 1652242 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCA-TGCCCGGGCTGTACTTTTCCAACGA 25988 || ||||||| ||||| ||| ||| | |||| | |||| || || || |||||||| Sbjct 1652241 GCTGCCATCTATTGGCTGAAGAAGA-GAGGACTAATGCCAGGTCTTACCTACTCCAACGA 1652183 Query 25989 GCTCATCAGCAGGGACGAGG 26008 ||| || |||||||| |||| Sbjct 1652182 GCTGATAAGCAGGGATGAGG 1652163 >seq80 Length=1733396 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 || || || ||||||||||| ||||| | | ||| | ||| ||| | || || ||| Sbjct 120979 ACCTGAAACTCTCCCGAGAGTACCCTGCGCGTGTAGATGTTGCTGGTGTAAGGCTCAATG 121038 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 ||| ||||||||||||||||| || ||| || |||||||| || |||| |||||| Sbjct 121039 GACTCATTGTTGCCCAGGATCTGGGCAGTGGAAGCTGTGGGCATTGGGGCCAGGAGCAGA 121098 Query 221243 CTGTT 221247 ||||| Sbjct 121099 CTGTT 121103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928688452199040