Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Labrus_20bergylta_20[refseq_20GCF_5F900080235.1_202016-05-03] 13,466 sequences; 805,480,521 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq86 125 8e-24 seq5694 122 1e-22 seq119 93.3 5e-14 seq399 91.5 2e-13 seq72 87.8 2e-12 >seq86 Length=1688118 Score = 125 bits (138), Expect = 8e-24 Identities = 348/525 (66%), Gaps = 18/525 (3%) Strand=Plus/Plus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || |||||| | || ||||| ||||| || || || || || ||| || Sbjct 229260 AAGTGGTTCACACACGCCTCACCTACCCTCTTCAATGCAGGAACCAACAGGCCACAGCTG 229319 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || |||||||||||| | || ||||| || ||| || || ||||| || || || || Sbjct 229320 TCCAGCTGCTTCCTGCTAGCCATGAAAGACGACAGCATTGAAGGCATTTATGACACTCTG 229379 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCG--GTATC-CACTGCTCGAAC 53443 ||| |||| |||| ||||||||| | | || || |||| ||| | | ||| | Sbjct 229380 AAGCAGTGCGCCCTCATCTCCAAATCAGCTGGAGGAATCGGCGTAGCAGTCAGCTGTA-- 229437 Query 53444 GTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCT 53503 | | ||| || | || || || || ||| | | | || | || || Sbjct 229438 -TTAGATCGACAGGGAGCTACATTGCCGGCACAAATGGCAACTCAAACGGTCTTGTCCCC 229496 Query 53504 ATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAG 53563 ||||| | || | |||||||||||| || || ||| |||||||| |||| | ||| Sbjct 229497 ATGCTGAGAGTGTACAACAACACGGCGCGTTATGTCGACCAGGGT----GGAAACAAAAG 229552 Query 53564 ----GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGA 53619 || | |||||||| ||||| ||||| |||||| || | | || || | || Sbjct 229553 GCCCGGAGCCTTCGCCATGTACCTTGAGCCCTGGCACTTTGATGTGTTTGACTTCTTGGA 229612 Query 53620 GCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGT 53678 |||| ||| || | || ||| | | | | ||||| || ||| || ||| Sbjct 229613 GCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGAGCCAGAGACCTCTTCTAC-GCCATGT 229671 Query 53679 GGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCC 53738 |||| || ||||| |||||| ||| || |||| || |||| |||| |||||||| | Sbjct 229672 GGATCCCCGACCTGTTCATGAAAAGAGTAGAGAGCAACCAGGACTGGTCTCTGATGTGTC 229731 Query 53739 CGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTT 53782 | || |||||||| || || | | ||| || || ||||||||| Sbjct 229732 CTAATGAGTGCCCTGGGCTGGATGAGTG-CTGGGGGGAGGAGTTT 229775 Score = 82.4 bits (90), Expect = 8e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| | || || ||||| ||||| || || || |||||| |||||||||||||| | Sbjct 230462 CCTGCTGCTCGCCCCGATGCCCACCGCCTCCACCGCACAGATCCTGGGCAACAACGAGTC 230521 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCAT 55611 ||||| | ||||| | |||||||||| ||| | ||| | || |||||| || Sbjct 230522 CATCGAGGCCTACACCAGCAACATCTACACCCGCAGAGTCCTGTCTGGAGAGTTTCAGAT 230581 Query 55612 GATCAACAAGCACCTCGTCAAGGACCTG 55639 ||||| || || |||| |||||| Sbjct 230582 CGTCAACCCTCATCTGCTCAAAGACCTG 230609 >seq5694 Length=14491 Score = 122 bits (134), Expect = 1e-22 Identities = 330/499 (66%), Gaps = 16/499 (3%) Strand=Plus/Minus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || |||||| | || ||||| ||||| || || || || || ||| || Sbjct 834 AAGTGGTTCACACACGCCTCACCTACCCTCTTCAATGCAGGAACCAACAGGCCACAGCTG 775 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || |||||||||||| | || ||||| || ||| || || ||||| || || || || Sbjct 774 TCCAGCTGCTTCCTGCTAGCCATGAAAGACGACAGCATTGAAGGCATTTATGACACTCTG 715 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCG--GTATC-CACTGCTCGAAC 53443 ||| |||| |||| ||||||||| | | || || |||| ||| | | ||| | Sbjct 714 AAGCAGTGCGCCCTCATCTCCAAATCAGCTGGAGGAATCGGCGTAGCAGTCAGCTGTA-- 657 Query 53444 GTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCT 53503 | | ||| || | || || || || ||| | | | || | || || Sbjct 656 -TTAGATCGACAGGGAGCTACATTGCCGGCACAAATGGCAACTCAAACGGTCTTGTCCCC 598 Query 53504 ATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAG 53563 ||||| | || | |||||||||||| || || ||| |||||||| |||| | ||| Sbjct 597 ATGCTGAGAGTGTACAACAACACGGCGCGTTATGTCGACCAGGGT----GGAAACAAAAG 542 Query 53564 ----GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGA 53619 || | |||||||| ||||| ||||| |||||| || | | || || | || Sbjct 541 GCCCGGAGCCTTCGCCATGTACCTTGAGCCCTGGCACTTTGATGTGTTTGACTTCTTGGA 482 Query 53620 GCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGT 53678 |||| ||| || | || ||| | | | | ||||| || ||| || ||| Sbjct 481 GCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGAGCCAGAGACCTCTTCTAC-GCCATGT 423 Query 53679 GGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCC 53738 |||| || ||||| |||||| ||| || |||| || |||| |||| |||||||| | Sbjct 422 GGATCCCCGACCTGTTCATGAAAAGAGTAGAGAGCAACCAGGACTGGTCTCTGATGTGTC 363 Query 53739 CGAACGAGTGCCCCGGCCT 53757 | || |||||||| || || Sbjct 362 CTAATGAGTGCCCTGGGCT 344 >seq119 Length=1396475 Score = 93.3 bits (102), Expect = 5e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 |||||| |||||||||| ||| ||||| || |||||||| | || ||||| || || Sbjct 390248 AGTGAAGATGTAACGAGGGCTGGCAGCGTCTTTGCCACCGTTGATGCGAGTACCAAACTG 390307 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 || |||| || || ||||| |||||| |||||||||||| ||||||||||| || Sbjct 390308 ACCCAGAGGCTGCAGGACGTTCACGTTGTTACTGCCCACAAAGTTCTGAGCCAAGTTCAC 390367 Query 117424 AATCGT 117429 || || Sbjct 390368 GATGGT 390373 Score = 86.0 bits (94), Expect = 7e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG- 152087 ||||||||||| || | |||||| || || |||||||| | || || |||||||| Sbjct 390249 GTGAAGATGTAACGAGGGCTGGCAGCGTCTTTGCCACCGTTGATGCGAGTACCAAACTGA 390308 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||||| |||| |||| ||| | |||||| |||||| || ||||||||||| ||||| Sbjct 390309 CCCAGA-GGCTGCAGGACGTTCACGTTGTTACTGCCCACAAAGTTCTGAGCCAAGTTCAC 390367 Query 152148 AATCGT 152153 || || Sbjct 390368 GATGGT 390373 >seq399 Length=483468 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||||| ||||||||||| ||||| ||||||||||| Sbjct 379235 GTGAAGATGTATCGAGGGCTGGCCGAGTCCTTGCCACCGTGCAGCCTGGTTCCAAACTGA 379294 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || |||| || || || | ||||||| ||||| || ||||| |||||| ||| Sbjct 379295 CCCATAGGCTGCAGCAGATTCAAGTTGTTGCTACCCACAAAGTTCTGGGCCAAACCAACA 379354 Query 152149 ATCGT 152153 || || Sbjct 379355 ATGGT 379359 >seq72 Length=1853568 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||| |||||||||| || || || | | ||| || ||||| ||||| | ||||||| Sbjct 1652165 TCATCCCTGCTTATCAGCTCGTTGGAGTAGGTAAGACCTGGCATTAGTCCTCTCTTCTTC 1652224 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||| |||||||| ||| || ||| |||||||||||| || || || || || Sbjct 1652225 AGCCAATAGATGGCAGCGAATGAGCCAGAGAAGAAGATGCCCTCCACTGCTGCGAAAGCC 1652284 Query 74892 ACAAGGCG 74899 ||||| || Sbjct 1652285 ACAAGTCG 1652292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547123889866800