Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Labrus_20bergylta_20[refseq_20GCF_5F900080235.1_202016-05-03] 13,466 sequences; 805,480,521 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq41 114 2e-20 seq4293 89.7 7e-13 seq715 89.7 7e-13 >seq41 Length=2248030 Score = 114 bits (126), Expect = 2e-20 Identities = 239/355 (67%), Gaps = 2/355 (1%) Strand=Plus/Plus Query 13685 AGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTCGA 13744 ||||| || |||||||| ||||||||||| |||||||| | ||||| |||||||| || Sbjct 1089960 AGAGG--GATTTTCCCATTGCCTACTCGATGGTGATCCATGAGAAGATTGAGATGTTTGA 1090017 Query 13745 GCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAA 13804 ||| || || || || | ||| | || |||||| ||||||| || ||||||||| || Sbjct 1090018 GCGACTTCTAAGAGCTGTTTACACTCCTCAGAACATCTACTGTGTGCACGTGGACCAGAA 1090077 Query 13805 GTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACGTGGC 13864 ||| | || || || | ||| || | ||||| ||||| ||| Sbjct 1090078 ATCCCCAAAAGAATTTCAAAAGGCTGCAGAGGCTATTGTTTCCTGCTTTCCTAATGTGCT 1090137 Query 13865 CCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGACCT 13924 | ||| | | | || ||||| | ||| ||| | |||||||| || | Sbjct 1090138 TTTAGCCAGCAAGTCAGAGAGGGTAGTGTATGCCTCATGGTCCAGAGTGCAGGCTGATTT 1090197 Query 13925 CAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACCTGTG 13984 | ||||||| || ||| | ||| | | || ||||||||||| |||| ||| || Sbjct 1090198 GAACTGCATGAAAGATCTGCTAGACTCACACATCCAGTGGAGGTACATGCTGAACACCTG 1090257 Query 13985 CGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCC 14039 ||||| |||||||| |||| |||||| ||||| | | ||| ||||| ||| Sbjct 1090258 CGGGACAGACTTCCCCATCAAAACCAACAGAGAGATGATCCAGGCACTGAAAGCC 1090312 >seq4293 Length=17228 Score = 89.7 bits (98), Expect = 7e-13 Identities = 199/295 (67%), Gaps = 3/295 (1%) Strand=Plus/Plus Query 13740 TTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGAC 13799 || ||||| || ||| | |||||||| || || || | |||||||| ||||||| ||| Sbjct 15915 TTTGAGCGACTGCTGCGAGCCATCTATGCACCTCAACATTTCTACTGCATCCACGTAGAC 15974 Query 13800 TCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAAC 13859 || || | || | | | || | | || ||| ||||| | || |||| ||| Sbjct 15975 AAAAAATCTGACGCCTCGGTGCTCTCTGCCATCACGGGCATCGTCTCCTGTTTCCG-AAC 16033 Query 13860 GTGGCCCTGGCCCACCGG-CTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGC 13918 || ||||| | ||||| ||| | | |||||| ||| | ||| |||||| ||||| Sbjct 16034 GTCTTCCTGGTCAACCGGACTGAAAG-CGTGGTCTACTCTGCATGGCCTCGCGTACAGGC 16092 Query 13919 CGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAA 13978 ||||||| ||| || ||| || | | | ||| |||| ||| | |||| Sbjct 16093 TGACCTCAACTGTATCGGGGATCTCTATAAAATCAGCACCAAATGGAAATACTTCATCAA 16152 Query 13979 CCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTG 14033 ||| || || ||| ||||| || || |||||| ||||||||||| || |||| Sbjct 16153 CCTCTGTGGCCAGGATTTCCCTCTAAAAACCAACTTGGAGATCGTGAGGATGCTG 16207 >seq715 Length=171198 Score = 89.7 bits (98), Expect = 7e-13 Identities = 199/295 (67%), Gaps = 3/295 (1%) Strand=Plus/Plus Query 13740 TTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGAC 13799 || ||||| || ||| | |||||||| || || || | |||||||| ||||||| ||| Sbjct 87117 TTTGAGCGACTGCTGCGAGCCATCTATGCACCTCAACATTTCTACTGCATCCACGTAGAC 87176 Query 13800 TCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAAC 13859 || || | || | | | || | | || ||| ||||| | || |||| ||| Sbjct 87177 AAAAAATCTGACGCCTCGGTGCTCTCTGCCATCACGGGCATCGTCTCCTGTTTCCG-AAC 87235 Query 13860 GTGGCCCTGGCCCACCGG-CTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGC 13918 || ||||| | ||||| ||| | | |||||| ||| | ||| |||||| ||||| Sbjct 87236 GTCTTCCTGGTCAACCGGACTGAAAG-CGTGGTCTACTCTGCATGGCCTCGCGTACAGGC 87294 Query 13919 CGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAA 13978 ||||||| ||| || ||| || | | | ||| |||| ||| | |||| Sbjct 87295 TGACCTCAACTGTATCGGGGATCTCTATAAAATCAGCACCAAATGGAAATACTTCATCAA 87354 Query 13979 CCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTG 14033 ||| || || ||| ||||| || || |||||| ||||||||||| || |||| Sbjct 87355 CCTCTGTGGCCAGGATTTCCCTCTAAAAACCAACTTGGAGATCGTGAGGATGCTG 87409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658628317724160