Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Labrus_20bergylta_20[refseq_20GCF_5F900080235.1_202016-05-03] 13,466 sequences; 805,480,521 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq4673 105 6e-18 seq349 95.1 1e-14 >seq4673 Length=16361 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | |||| ||| || ||| ||||| || || || || || Sbjct 2232 CATGCCTCCCCTCAGACGAAGAACCAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTC 2291 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || || | || || ||||| ||||| || || || ||||||||||| |||| Sbjct 2292 GGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCGGG 2351 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | | |||||| ||| ||| || || | || | | || ||||| | ||| Sbjct 2352 GGGGATACCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTC 2411 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| |||| ||||| | || || ||||| || ||||||||||| ||||| Sbjct 2412 CACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTAACAAAGATCTGCAT 2462 Score = 104 bits (114), Expect = 2e-17 Identities = 160/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | || | ||| || || || ||| ||| || || || || || |||| Sbjct 2009 CCTCCCCTCAGACGGAGCAC-AAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 2067 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| ||||| ||||| || ||||||||||| |||| ||| Sbjct 2068 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCGGGGGGG 2127 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||||| ||| ||| || |||| || | | || ||||| | |||||| Sbjct 2128 ATTCCTTCTTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCCACC 2187 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || ||||| || ||||||||||| ||||| Sbjct 2188 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTAACAAAGATCTGCAT 2234 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | || | ||| | || || ||| ||| || || || || || |||| Sbjct 2464 CCTCCCCTCAGACGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 2523 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| ||||| ||||| || ||||||||||| |||| ||| Sbjct 2524 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCGGGGGGG 2583 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | || || ||| ||| || |||| | | | || || || | |||||| Sbjct 2584 ATCCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATTGTGTCACTTGGCTCCACC 2643 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 |||| ||||| | || || || || || || |||||||| |||||||| || Sbjct 2644 TCCAAAGTGATGGTCTTCCCGGTTAGGGTCTTCACAAAGATCTGCATCTTGAC 2696 >seq349 Length=568042 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | || | || || ||| ||| || || || || || || Sbjct 322047 CATGCCTCCCCTCAGACGCAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 321988 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || || | || || ||||||||||| ||||| || || | ||||||||| | Sbjct 321987 GGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGG 321928 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | || ||| |||||| |||||| |||| || | | || || || | ||| Sbjct 321927 GGGGATGCCCTCCTTGTCCTGGATTTTTGCCTTGACATTCTCAATGGTGTCACTTGGCTC 321868 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 ||| || | ||||| | || || || || || || |||||||| ||||| ||| Sbjct 321867 CACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATTTTT 321813 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 ||||| || || || || |||| || || || | || || ||||||||||| ||||| Sbjct 322235 TCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAG 322176 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || || | |||||| || | ||| | || || |||||| ||| || |||| || Sbjct 322175 ATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTC 322116 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | || || || | |||||| |||| ||||| | ||||| || || || || ||| Sbjct 322115 TCAATGGTGTCACTTGGCTCCACCTCCAAGGTGATGGTCTTTCCAGTGAGGGTCTTCACA 322056 Query 39274 AAGATTTGCAT 39284 ||||| ||||| Sbjct 322055 AAGATCTGCAT 322045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429475104318458