Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Labrus_20bergylta_20[refseq_20GCF_5F900080235.1_202016-05-03] 13,466 sequences; 805,480,521 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4673 147 5e-30 seq349 131 4e-25 >seq4673 Length=16361 Score = 147 bits (162), Expect = 5e-30 Identities = 159/209 (76%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || || || || || || |||||||| |||||||| || ||| Sbjct 2459 CAGATCTTTGTTAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 2402 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| || ||||| ||||| ||||| || ||||| || || |||| Sbjct 2401 ACACCATTGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGTATCCCCCCCGATCAGC 2342 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||||||||| || ||||| |||||||| | || || |||| || ||| Sbjct 2341 AGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACA 2282 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTT 178130 |||| |||||||| || || ||||| ||| Sbjct 2281 TCCAGAAAGAATCCACTCTCCATCTGGTT 2253 Score = 136 bits (150), Expect = 1e-26 Identities = 157/208 (75%), Gaps = 5/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || || || || || || |||||||| |||||||| || ||| Sbjct 2231 CAGATCTTTGTTAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 2174 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| ||||| |||||||||||||| || || |||| Sbjct 2173 ACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATCCCCCCCGATCAGC 2114 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 2113 AGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACA 2054 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || ||||| Sbjct 2053 TCCAGAAGGAGTCCACCCTCCA-CTTGT 2027 >seq349 Length=568042 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || ||||| || || || |||||||| || ||||| || || Sbjct 326750 CAGATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAAGTGGA--GCCAAGTG 326807 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| |||||||| || || || || || || |||| Sbjct 326808 ACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGC 326867 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 326868 AGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACA 326927 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || || || ||||| Sbjct 326928 TCCAGAAAGAATCCACCCTCCACCTTGT 326955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203523516494404