Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq265 479 3e-130 seq1140 93.3 5e-14 seq714 84.2 3e-11 >seq265 Length=606166 Score = 479 bits (530), Expect = 3e-130 Identities = 1258/1904 (66%), Gaps = 33/1904 (2%) Strand=Plus/Plus Query 53132 AGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTA 53191 || ||||| ||||| || | ||||| |||||||| | ||||| || ||||| || || Sbjct 295651 AGCAGATGAGGATTCACGATCTGAAACTCTCCAGAGAGGACTCTGCGGGTGTAGATGTTG 295710 Query 53192 CTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 53251 ||||| || | ||| | |||||| || || |||| || || || || || || || ||| Sbjct 295711 CTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAGGCCGTGGGC 295770 Query 53252 ATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAG-AGG 53310 || || |||| || | || || || | || | | | ||| || ||||| || || Sbjct 295771 ATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCTTTCAGCAGC 295830 Query 53311 TTCCCAATTCCAA-AGATCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACC 53367 |||| | ||||| ||||| | || | | | || || || || Sbjct 295831 TTCC--AGTCCAACAGATCGGTGGG--CGTCTTCTCCCACATGTCGTACTGGAGGATGCC 295886 Query 53368 GTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACA 53427 || ||| | || ||| | || || ||||| || || || | || || || || Sbjct 295887 CTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGCTCGCA 295946 Query 53428 ACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGC 53487 |||||||| | || |||| || ||||| || || || | | || || || || Sbjct 295947 GCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAATATTTGGATGTTCAGCAGCTGCGC 296006 Query 53488 TTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACC 53547 || |||| ||||| || ||| | || || || || || || || |||||||| || Sbjct 296007 CTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATCCGCCAAACCTTGAACGCC 296066 Query 53548 AATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATT 53607 ||| || || || || || | ||| || || | || ||||| || | ||||| | || Sbjct 296067 AATTCCTATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCGGGCACTGGATAGAAGTT 296126 Query 53608 AATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCAC--ATCCTTCAGTTTG 53665 ||| || || || || || | |||| |||| || |||||| ||| || || ||||| Sbjct 296127 AATCTCGATGATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACGGATGCT--AGTTTT 296184 Query 53666 AGAAAATCAAATTGTCCATCTA----TTACAAACATGTTCAATGCAATAGATGCCAGATT 53721 ||| ||||| |||| | | || ||||||| | || || || |||||||| Sbjct 296185 TTAAAGTCAAAA-GTCCGCTCAGGGGTGACGTACATGTTGAGGGCGATGGAGGCCAGATT 296243 Query 53722 ACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACA 53781 ||| || |||||||| | | | |||| | || || ||||| || || || | Sbjct 296244 ACAGACCGCTACCTCGTCGTCGCTGGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGCT 296303 Query 53782 CTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAAT 53841 ||||| || || | ||| || || || |||||| ||| || || || || || || || Sbjct 296304 TTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGGCGTCTTTGTACAGCAT 296363 Query 53842 GAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTT 53901 | | ||||| || ||||| ||||||| || ||||| || | ||| || ||||||| Sbjct 296364 GTACGGCGTGCCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCACACCTGCTGAGCCTT 296423 Query 53902 TATTATAGATTTGTATCTCTTTTCTCTTTCGTAT--AGTGTATACAATCGTTCAAACTCG 53959 | | | ||| ||| || | || ||| |||||| | || |||||||| Sbjct 296424 CACCACACGCTTGACCCTCCCCTCCTTCTCATATGAAGTGTAGAGCTTC--TCAAACTCC 296481 Query 53960 TCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCG 54019 || |||||| | ||||| || ||||| |||| |||||||||| ||||| ||| | Sbjct 296482 TCACCCCAACACTCGTCCAGCCCGGGACACTCATTGGGACACATCAGAGACCAGTCTTGG 296541 Query 54020 TCATCCTT--CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCT 54076 | | ||| ||||| ||||| || | || || ||||| || || || ||| || ||| Sbjct 296542 T--TGCTTTCCACTCTCTTCATGAACAAGTCGGGGATCCACAGGGCGTAGAAA-AGGTCT 296598 Query 54077 CTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCA 54136 |||| || || ||||| |||||||| ||||| || || || ||||| | | | ||| Sbjct 296599 CTGGCCCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCA 296658 Query 54137 GAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCT 54196 | |||||||| |||| ||| |||| | |||| || | |||||| || ||||| || Sbjct 296659 AAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTGCCGCCCTGGTCG 296718 Query 54197 ATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCA 54256 | || | || ||||| || |||||||||| ||| || | | || || || || Sbjct 296719 ACATAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAACCCGTTTGAGTTGCCG 296778 Query 54257 TTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCC 54316 || || |||| || ||||| || | | | || || | | | || || || Sbjct 296779 TTTGTGCCGGCAATGTAGCTCCCCGTTGATCTGATGCAGCTGACCGCCACGCCGATTCCT 296838 Query 54317 CCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTA 54376 || ||| || ||||| | || || | || | || || |||||||| || || || Sbjct 296839 CCAGCCGACTTTGAGATGAGGGCACACTGCTTCAGAGTGTCGTAGATGCCTTCGATGCTG 296898 Query 54377 TCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTA 54436 || ||| ||||| || || || ||||| |||| || | | | || || ||||| Sbjct 296899 TCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTACCGGCATTG 296958 Query 54437 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATA 54496 || | ||||| || ||||| || ||||| || || || || || ||||| ||||| || Sbjct 296959 AAGAGAGTAGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATG 297018 Query 54497 GCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGT 54556 |||| ||| || ||| | || || || || | || | ||| | ||||||||| || Sbjct 297019 GCTGCGTCGATGTCCGTTCTGTGGATGCCAACGGAAACCCTCATGAGCATGTGCTGGGGA 297078 Query 54557 CTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCA 54616 | ||| | | ||| ||| || ||||||| |||||| |||| ||| || || ||| Sbjct 297079 CGTTCGGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCGCTCCAGAGTCTTGAAGCCA 297138 Query 54617 AAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATAT 54676 || ||||||| || ||||| || ||| |||| || | |||||||| || || | Sbjct 297139 AAGAAGTTGTAGGAGAAGTCGCGGTCGAAAATGATGGCGGAGTTGAGGCGGTCTTTGTTC 297198 Query 54677 TTGTTAACTACATCCATGGTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTA-- 54733 | | || | || | || | ||| || || || ||||| || | | || | Sbjct 297199 TCCTGGACAATGTCGAGCGT-CTCCTTGGAGATCATGGGAGA--GTGGCGTTTGTTCAAG 297255 Query 54734 GGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTG 54793 || ||||| ||||| | | |||| ||||||||| || || | || || || |||||| Sbjct 297256 GGGTTGACGTAGTTGTACAGGTCCTCCATCACTTCGCTGAACACCTTCTTGGTCTCTTTG 297315 Query 54794 TGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTA 54853 || || ||||| ||||| || | |||||| || || ||||| || || |||| || || Sbjct 297316 TGCAGGTTTGAGACGGCGATCCGAGCGGCAAGGATTGCATAGTCGGGGTGTTTGGTTGTG 297375 Query 54854 CAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATAT 54913 |||||| || || || || | ||| ||||| | || || || || || || | || Sbjct 297376 AGAGTGGCGGCGATCTCAGCCGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTAC 297435 Query 54914 ATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCA 54973 | || || || |||||||| | || | ||||| | | |||| ||| | || Sbjct 297436 AAACCCTGAATCACCTTCATCGTAATCTGGGCCGGATCCACAAAGTCAGAGTTCAGCCCG 297495 Query 54974 TAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGAC 55017 || || | || || || || ||||||||||| |||||||| Sbjct 297496 TAGCACAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGAC 297539 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || ||||| || || |||||| || |||| || || || ||||| | Sbjct 295311 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTCGGCTCCGCGATGTGGATGT 295370 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| || || || || ||||||||||| || | ||| || ||||| || | | |||| Sbjct 295371 TCAGGGACTGGCTCTGGTCGATGAAGGCGCCGCGGTCGGCTGCCATCTTGAGCACGGTCT 295430 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 53043 | || | || ||||| | |||||||| | |||| | ||| ||||| Sbjct 295431 TCTGGGAGATCTCCCACACGGTTTTATACAGCTGCTTCAGATCGTCTGG 295479 >seq1140 Length=734468 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| || || |||||||| | || || || || |||| ||||| || | Sbjct 322261 CACTGAACACTTTCTTGGTCTCTTTGTGCAAGTTAGACACAGCGATTCGTGCGGCGAGGA 322320 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 || || || ||||||| || || |||||| || | || |||| ||||||||||| Sbjct 322321 GTGCGTAGTCGGGATGTTTGGTGGTTAGAGTGGCGGCGGTCTCTGCTGCCAGAGTGTCCA 322380 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||||| || || |||||| | || | || ||||| |||||||| Sbjct 322381 GCTCTACTGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 322426 >seq714 Length=827726 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| || || ||||| | || ||||| || || || ||||||||||| || | ||| | Sbjct 573723 CCTCATCCCTGCTAATCAGCTCATTGGAGAAGGTAAGACCGGGCATTAGCCCTCTCTTCT 573782 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | |||||| | |||| || ||||| || || ||||| || || || ||||| || || | Sbjct 573783 TGAGCCAATAGATGGCAGCGAATGAGCCTGAGAAGAAGATACCCTCCACTGCTGCGAAAG 573842 Query 24277 CAATAAGTCTTTCTCC 24292 | | ||||| || || Sbjct 573843 CCACGAGTCTCTCCCC 573858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593676966978720