Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1327 167 3e-36 >seq1327 Length=1883937 Score = 167 bits (184), Expect = 3e-36 Identities = 143/177 (81%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 145746 CTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAA 145805 || ||| || |||| ||| |||| ||||||||| || || | |||||||| || ||||| Sbjct 831683 CTTGAGTCCGGTGATGTGTGCGATCATGTAGGTAAGAAGCGCATAGCTGGCGATATTGAA 831742 Query 145806 GGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCC 145865 |||||||| || |||||||| || ||||||||||||||||| || || ||||| || | Sbjct 831743 AGGCACCCCGAGGCCCATGTCACCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCATC 831802 Query 145866 CGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTC 145922 |||||||||||| |||||| ||||||||| ||||| |||||| ||||||||| Sbjct 831803 GCACACGTAGAACTGACACAGGGCGTGGCAGGGGGGCAGAGCCATGAAGGGCAGGTC 831859 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 146040 GTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTC 146099 |||| | ||||| ||||| ||||||||||| ||||| ||||| |||||||| || ||| Sbjct 832541 GTACTCTGCCCCAAAGTGTCTCCACTGGAAACCGTACACGGGTCCCAGGTCGCCTTCCTC 832600 Query 146100 CCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTT 146159 || | | | |||| | | |||||||| || ||||||||||| ||||| ||||| Sbjct 832601 TCTATCCGTGAACCCGAGATTGTCCAGGAAGTCTCGAGACCCGTTGGCTTCCCAAATCTT 832660 Query 146160 GACGCCCCTCGCGGAGAGCTCATTGG 146185 || || || | |||||||| |||| Sbjct 832661 CACTCCTTTCTCAGAGAGCTCCTTGG 832686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590032440976560