Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq725 93.3 5e-14 >seq725 Length=459395 Score = 93.3 bits (102), Expect = 5e-14 Identities = 174/254 (69%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 ||||||||| |||||||| ||||| ||||| | ||| | || |||| | | || Sbjct 234834 GAACTTCTCAAAGTTCCACGCCACATCGTTCCTGCAGATCGGGCTCCAGATGACTAACTT 234893 Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAA 83262 |||||| | | || | || | |||||| |||| | ||| || |||| ||||| Sbjct 234894 GGGGTCAGTAATGAAAGCGCACGGCTCGTCGGTAGGGGACGGGAGACTTTCTCTCAGGAA 234953 Query 83263 GGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAG 83320 | || || ||||| || |||| | | || || || |||||| | ||| ||| Sbjct 234954 CACAAACAGGGGATGGGCATCCTTTC--CATTTACATCCACCTTCTCCAGCAGCTGAAAC 235011 Query 83321 TTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTC 83380 || ||||| ||||| || ||||||||||||| ||||||||| | ||| || ||||| Sbjct 235012 TTTGGCTCAAAGCCATTTCCAGGACGGACGTACTTCAGGGACAAGAGGATTTCTTCATTC 235071 Query 83381 TGGGCGTTTTCCTG 83394 | ||| ||||| Sbjct 235072 TTACAGTTCTCCTG 235085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608751033700560