Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1833 127 2e-24 seq265 127 2e-24 >seq1833 Length=1844611 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || || |||||||| ||| | |||||| || || Sbjct 459694 CACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCTTC 459635 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| ||||||||| |||||||||||||||| || ||||| |||||||||||||| Sbjct 459634 TAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTG 459575 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | ||| | |||||| || ||| ||||| | ||| | || || Sbjct 459574 GATCTTAGCCTTGACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTT 459515 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || || |||||||| Sbjct 459514 TCCAGTCAGGGTCTTCACGAAGATCTGCAT 459485 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || || |||||||| ||| | ||||| |||||| || || Sbjct 459915 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGTTGC 459856 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 ||||||||| |||||||||||||||| || ||||| ||||||||||| || || || Sbjct 459855 TTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTA 459796 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| |||||| || ||| ||||| | ||| | || || |||||| Sbjct 459795 GCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTTCCGGTC 459736 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| |||||||| Sbjct 459735 AGGGTCTTCACAAAGATCTGCAT 459713 Score = 118 bits (130), Expect = 9e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || || |||||||| ||| | ||||| ||||||||||||| Sbjct 459459 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGT 459400 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || || |||||||||||||||| || ||||| ||||||||||| || || || Sbjct 459399 TTGCCGGCAAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTA 459340 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| |||||| || ||| ||||| | ||| | || || || ||| Sbjct 459339 GCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTTCCAGTC 459280 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 | || || ||||| |||||||| Sbjct 459279 AAGGTCTTCACAAAGATCTGCAT 459257 >seq265 Length=606166 Score = 127 bits (140), Expect = 2e-24 Identities = 452/691 (65%), Gaps = 28/691 (4%) Strand=Plus/Plus Query 133275 GTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATG 133334 ||| | | ||||| ||| ||||||||||| || ||||| || || | ||||||||||| Sbjct 295714 GTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAGGCCGTGGGCATC 295773 Query 133335 TACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTC 133394 |||| || || ||| || ||||| | ||| || || | || ||| Sbjct 295774 GGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCTTTCAGCAGCTTC 295833 Query 133395 CAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGC 133454 |||||| |||||| | ||| || | ||||| | | | || || | || Sbjct 295834 CAGTCCAACAGATCGGTGGG--------CGTC-TTCTC--CCACAT-GTCGT---ACTGG 295878 Query 133455 AAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCC 133514 | || ||| |||| |||||| | | ||||| || ||||| ||| |||| Sbjct 295879 AGGATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCC 295938 Query 133515 AGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATT-GAATAGTTGAC 133573 ||||||||||| ||||||| ||||| |||| ||||| || ||| | || ||| | Sbjct 295939 AGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAATATTTGGAT-GTTCA- 295996 Query 133574 GAACCTG-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCAAA 133631 | | ||| || ||| ||| || | | | | || | || | || || || |||||| Sbjct 295997 GCAGCTGCGCCTCGGGGCTTTCAAACGGG-TAACGCATCAGGATGAAGGCATCCGCCAAA 296055 Query 133632 CCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTG 133691 || || | ||| | || || || | || || ||| | |||||| |||| | Sbjct 296056 CCTTGAACGCCAATTCCTATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCGGGCACT 296115 Query 133692 GGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAA--AT 133749 |||||| ||| | |||||||||||||| | || |||||| | ||| |||| || Sbjct 296116 GGATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACGGAT 296175 Query 133750 GTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAA 133809 | | || | ||||||| ||| || | || |||| || |||||| ||| | Sbjct 296176 GCT--AGTTTTTTAAAGTCAAAAGTCC--GCTCAGGGGT-GACGTACATGTTGAGGGCGA 296230 Query 133810 TACTGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCGC 133869 | ||| |||||||| || || ||||| ||| | || | ||||| || | || Sbjct 296231 TGGAGGCCAGATTACAGACCGCTACCTCGTCGTCGCTGGTGTATTCAACGATTTCTGTGC 296290 Query 133870 AGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGAT 133929 |||||||||||| |||||| ||||||| ||| | || ||||| ||||| | Sbjct 296291 AGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGGCGT 296350 Query 133930 CCTTGTATAGCATGTACGGCCCGCCGGTTTC 133960 | ||||| |||||||||||| ||||||||| Sbjct 296351 CTTTGTACAGCATGTACGGCGTGCCGGTTTC 296381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433798602129688