Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq6013 98.7 2e-15 seq542 98.7 2e-15 >seq6013 Length=1912128 Score = 98.7 bits (108), Expect = 2e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 51893 GAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCA 51952 |||| | |||| ||| | | || || || || || || |||| ||||| ||||||| Sbjct 2187 GAGCTCTGTGGTGGTATTTCGTCTCTAAGGGCATCGAGTATCTGGACACGGTGTTTTTCA 2246 Query 51953 TACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGT 52012 | || ||||||||||| || ||||||| ||| || ||||| || || || | || |||| Sbjct 2247 TCCTGAGGAAAAAATTCAACCAGGTTACTTTCCTGCACGTCTACCACCACTGCACCATGT 2306 Query 52013 TTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAG 52056 | || || | ||||| || || |||||| | || ||||| ||| Sbjct 2307 TCACGCTCTGGTGGATTGGCATCAAATGGGTGGCAGGAGGGCAG 2350 >seq542 Length=155321 Score = 98.7 bits (108), Expect = 2e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 51893 GAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCA 51952 |||| | |||| ||| | | || ||||| || || || |||| || || ||||||| Sbjct 14275 GAGCTCTGTGGTGGTATTTCGTCTCTAAAGGCATCGAGTATCTGGACACCGTGTTTTTCA 14216 Query 51953 TACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGT 52012 | || ||||||||||| || ||||||| ||| || ||||| || || || | || |||| Sbjct 14215 TCCTGAGGAAAAAATTCAACCAGGTTACTTTCCTGCACGTCTACCACCACTGCACCATGT 14156 Query 52013 TTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAG 52056 | || || | ||||| || || |||||| | || ||||| ||| Sbjct 14155 TCACGCTCTGGTGGATTGGCATCAAATGGGTGGCAGGAGGGCAG 14112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923127398680560