Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1833 104 2e-17 seq1532 98.7 6e-16 >seq1833 Length=1844611 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | || || ||||| |||||||||||||| || || |||| Sbjct 459696 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCT 459637 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| ||||| ||||||||||| || | || ||||||||| Sbjct 459636 TCTAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCC 459577 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | ||| | | || || |||| |||||||| Sbjct 459576 TGGATCTTAGCCTTGACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 459517 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || || ||||| ||||||||||| Sbjct 459516 TTTCCAGTCAGGGTCTTCACGAAGATCTGCAT 459485 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||||| || ||| | || || | ||||| || ||||| Sbjct 459903 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCGAAG 459844 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| ||||||||||| || | || |||||| || ||||| ||| | | Sbjct 459843 ATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTAGCCTTCACGTTC 459784 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || |||| |||||||| || ||||| || || |||||| Sbjct 459783 TCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTTCCGGTCAGGGTCTTCACA 459724 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 459723 AAGATCTGCAT 459713 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||||| || ||| | || || | ||| ||||| || || Sbjct 459447 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGTTTGCCGGCAAAG 459388 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| ||||||||||| || | || |||||| || ||||| ||| | | Sbjct 459387 ATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTAGCCTTGACGTTC 459328 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || |||| |||||||| || || || | || |||||| Sbjct 459327 TCGATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTTCCAGTCAAGGTCTTCACA 459268 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 459267 AAGATCTGCATC 459256 >seq1532 Length=669350 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | || | ||| || ||||| | || || ||||| |||||||||||||| Sbjct 291140 CCGCCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 291199 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||| ||||| || || || |||| ||||| ||| ||| Sbjct 291200 AGGGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTTGTCAGGGGGA 291259 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | || | ||| | | ||||| Sbjct 291260 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACC 291319 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||||||||| || || || ||||||||||| Sbjct 291320 TCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 291366 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | ||| | ||| || || || | || || ||||| |||||||||||||| Sbjct 291596 CCGCCCCTCAGACGCAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 291655 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||| ||||| || || || |||| ||||||||| ||| Sbjct 291656 AGGGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 291715 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||| || ||||| ||| | | | || | ||| | | ||||| Sbjct 291716 ATGCCTTCCTTATCCTGGATCTTAGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACC 291775 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||||||||| || || |||||||||||||| Sbjct 291776 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 291822 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | ||| | ||| || || || | || || ||||| || ||||||||||| Sbjct 291368 CCGCCCCTCAGACGCAGGACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGAG 291427 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||| ||||| || || || |||| ||||||||| ||| Sbjct 291428 AGGGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 291487 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| || ||| ||||| | | | || | ||| | | || || Sbjct 291488 ATGCCTTCCTTGTCCTGGAT-TTTAGCTTTCACGTTCTCAATGGTGTCGCTGGGCTCAAC 291546 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || || || || || ||||||||||| Sbjct 291547 CTCCAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 291594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323048320235840