Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq649 259 3e-64 >seq649 Length=1139610 Score = 259 bits (286), Expect = 3e-64 Identities = 613/910 (67%), Gaps = 26/910 (3%) Strand=Plus/Plus Query 107676 TTCAT-ACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGT 107734 ||||| ||||| || || ||| |||| ||| |||||| || ||||| ||||||||||| Sbjct 925431 TTCATTACAGTGCCT-CTCAGTGAAGAGGAGAAAGACTTTCCAATTGCTTACTCGATGGT 925489 Query 107735 GGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAA 107794 |||||||||||||||| | ||||| || || || ||||| | ||||| |||||||| Sbjct 925490 AATCCATGAGAAGATTGAGATGTTTGAGCGACTTCTACGAGCTATTTATGCTCCTCAGAA 925549 Query 107795 CATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGC 107854 ||| || ||||| || ||||| ||| ||| |||| || || | || || ||| Sbjct 925550 CATCTATTGTGTGCATGTGGACAGGAAATCCTCAGAAACATTTAGGATAGCAGTGGGGGC 925609 Query 107855 CATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGC 107914 ||||| |||||||| || || || || || ||||| | || | ||||| ||||| Sbjct 925610 AATTATCTCCTGCTTTCCTAACGTGTTTATAGCCAGCAGATTAGAAAGCGTGGTATATGC 925669 Query 107915 CTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA-- 107972 || ||||| | ||||| || || ||||||| |||||||| |||| ||||||| Sbjct 925670 TTCATGGTCTCGGGTGCAGGCAGATTTGAACTGCATGGAAGATCTGCT---GAGCTCACA 925726 Query 107973 -GTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGC 108031 | | |||| ||| | || || || || ||||||||||||||||| || |||||| Sbjct 925727 CATCCAGTGGAGGTATCTGCTTAACACCTGTGGGACAGACTTCCCCATCAAAACCAATAG 925786 Query 108032 CGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACC 108091 |||||||| | ||| || | | | | || | ||||| |||||| ||||||| | Sbjct 925787 AGAGATGGTTCAGGCGCTGACGGCCCTCCAAGGGAGAAACAGCATGGAGACTGAGGTCAC 925846 Query 108092 TTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCC 108151 || ||||||| || ||| | || | || | || || ||| || | Sbjct 925847 AAGGGAACACAAAAAAGTCCGTTGGCAGTATCATTACAATGTCACTGAC---GTGATC-- 925901 Query 108152 TACCAGCA-AGATG-AAGGA----CCCTCCCCCTGATAATTTACCCATGTTCACAGGG-A 108204 ||| | | ||||| ||||| || || || || | | |||||||| ||||| | Sbjct 925902 -ACCTGGACAGATGTAAGGAAAAGTCCCCCACCCATTAGTGTCCCCATGTT-TCAGGGAA 925959 Query 108205 ATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCC 108264 |||| || |||| | ||| | || ||||| ||||||| | || || | | | Sbjct 925960 ATGCTTACGTTGTTGTCTCAAGGGCTTTTGTGAAACATGTGATGGAGGACAGTGAGGTTC 926019 Query 108265 AAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCC 108324 | | | | | || |||| |||||||| || ||||| ||||| ||| | |||||||| | Sbjct 926020 AGAAATTTCTGGAGTGGGAGAAAGACACATACAGCCCTGACGAGCACTTGTGGGCCACTC 926079 Query 108325 TTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAG 108384 | ||| | || | | || || || || ||| ||| ||||||| | |||| Sbjct 926080 TACAGAGGATACCCTCCGTTCCCGGATCAGTGCCTGCACACATCAAGTATGATGAGTCAG 926139 Query 108385 ACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGG 108444 |||||| |||||| || | | || |||||| || |||||||| || | | Sbjct 926140 ACATGAATGCCATTGCTCGTGTGGTGAAGTGGGGTGGTTTAGACGGAGATGTGAGAAACG 926199 Query 108445 GGGCGCCTTATGCACCCTGCTCTGGAATCCATC-GGAGGGCCATCTGCATTTACGGGGCC 108503 |||| | |||| || ||| |||| | | || | || | | || |||| || ||| Sbjct 926200 GGGCTGCATATGATCCTTGCACTGGTA-CTTTCAGAAGAGGAGTTTGTGTTTATGGAGCC 926258 Query 108504 GGGGACCTGTACTGGATTCTCCAGA-ACCATCACCTCTTGGCAAACAAGTTTGACCCGAG 108562 || || || | ||| | || ||| | | || ||||| ||||| |||||||| || Sbjct 926259 GGTGATCTCCAGTGGCTCCT-GAGACAACGCCAGCTCTTTGCAAATAAGTTTGATCCTGA 926317 Query 108563 GGTGGATGAT 108572 ||| |||||| Sbjct 926318 GGTTGATGAT 926327 Score = 259 bits (286), Expect = 3e-64 Identities = 547/805 (68%), Gaps = 22/805 (3%) Strand=Plus/Plus Query 107676 TTCAT-ACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGT 107734 ||||| ||||| || || ||| |||| ||| ||||||||||||||| ||||||||||| Sbjct 929471 TTCATTACAGTGCCT-CTCAGTGAAGAGGAGAAAGACTTCCCCATTGCTTACTCGATGGT 929529 Query 107735 GGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAA 107794 |||||||||||||||| | ||||| || || || ||||| | ||||| |||||||| Sbjct 929530 AATCCATGAGAAGATTGAGATGTTTGAGCGACTTCTACGAGCTATTTATGCTCCTCAGAA 929589 Query 107795 CATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGC 107854 ||| || ||||| || ||||| ||| ||| |||| || || | || || ||| Sbjct 929590 CATCTATTGTGTGCATGTGGACAGGAAATCCTCAGAAACATTTAGGATAGCAGTGGGGGC 929649 Query 107855 CATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGC 107914 ||||| |||||||| || ||||| || || ||||| | || | ||||| ||||| Sbjct 929650 AATTATCTCCTGCTTTCCTAATGTGTTTATAGCCAGCAGATTAGAAAGCGTGGTATATGC 929709 Query 107915 CTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA-- 107972 || ||||| | ||||| || || ||||||| |||||||| |||| ||||||| Sbjct 929710 TTCATGGTCTCGGGTGCAGGCAGATTTGAACTGCATGGAAGATCTGCT---GAGCTCACA 929766 Query 107973 -GTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGC 108031 | | |||| |||| | || || || || ||||||||||||||||| || |||||| Sbjct 929767 CATCCAGTGGAGGTACCTGCTTAACACCTGTGGGACAGACTTCCCCATCAAAACCAATAG 929826 Query 108032 CGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACC 108091 |||||||| | ||| || | | | | || | ||||| |||||| ||||||| | Sbjct 929827 AGAGATGGTTCAGGCGCTGACGGCCCTCCAAGGGAGAAACAGCATGGAGACTGAGGTCAC 929886 Query 108092 TTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCC 108151 || ||||||| || ||| | || | || | || || ||| || | Sbjct 929887 AAGGGAACACAAAAAAGTCCGTTGGCAGTATCATTACAATGTCACTGAC---GTGATC-- 929941 Query 108152 TACCAGCA-AGATG-AAGGA----CCCTCCCCCTGATAATTTACCCATGTTCACAGGG-A 108204 ||| | | ||||| || || || || || || | | |||||||| ||||| | Sbjct 929942 -ACCTGGACAGATGTAACGAAAAGTCCCCCACCCATTAGTGTCCCCATGTT-TCAGGGAA 929999 Query 108205 ATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCC 108264 |||| || |||| | ||| | || ||||| ||||||| | || || | | | Sbjct 930000 ATGCTTACGTTGTTGTCTCAAGGGCTTTTGTGAAACATGTGATGGAGGACAGTGAGGTTC 930059 Query 108265 AAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCC 108324 | | | | | || |||| |||||||| || ||||| ||||| ||| | |||||||| | Sbjct 930060 AGAAATTTCTGGAGTGGGAGAAAGACACATACAGCCCTGACGAGCACTTGTGGGCCACTC 930119 Query 108325 TTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAG 108384 | ||| | || | | || || || || ||| ||| ||||||| | |||| Sbjct 930120 TACAGAGGATACCCTCCGTTCCCGGATCAGTGCCTGCACACATCAAGTATGATGAGTCAG 930179 Query 108385 ACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGG 108444 |||||| |||||| || | | || |||||| || |||||||| || | | Sbjct 930180 ACATGAATGCCATTGCTCGTGTGGTGAAGTGGGGTGGTTTAGACGGAGATGTGAGAAACG 930239 Query 108445 GGGCGCCTTATGCACCCTGCTCTGG 108469 |||| | |||| || ||| |||| Sbjct 930240 GGGCTGCATATGATCCTTGCACTGG 930264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348243273420636