Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq265 105 1e-17 >seq265 Length=606166 Score = 105 bits (116), Expect = 1e-17 Identities = 383/594 (64%), Gaps = 9/594 (2%) Strand=Plus/Minus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | ||||||| ||||| || |||||| || || || || || || | ||||| Sbjct 297149 TACAACTTCTTTGGCTTCAAGACTCTGGAGCGGTCCTACCTGCTGAAGATCAACGGCAAA 297090 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 | | ||||| ||||||||| | ||| | || | || || || |||| ||| Sbjct 297089 GTGGCCGAACGTCCCCAGCACATGCTCATGAGGGTTTCCGTTGGCATCCACAGAACGGAC 297030 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACA 248997 || || | | ||||| |||| | || || ||| | || || ||| | Sbjct 297029 ATCGACGCAGCCATTGAGACCTACAACCTGCTGTCGGAGAAGTGGTTCACCCACGCCTCG 296970 Query 248998 CCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCC 249057 || || |||||||| ||||||||| || ||||||| | ||||| || || ||| Sbjct 296969 CCTACTCTCTTCAATGCCGGTACCAACAGGCCTCAGCTGTCCAGCTGCTTCCTGCTCGCC 296910 Query 249058 ATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCT 249117 ||| | |||||| |||| ||||| || ||||| || || ||| || || || Sbjct 296909 ATGAAGGACGACAGCATCGAAGGCATCTACGACACTCTGAAGCAGTGTGCCCTCATCTCA 296850 Query 249118 AAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATC 249177 || | || || |||||||| | | ||| | |||| || | | ||| ||||| Sbjct 296849 AAGTCGGCTGGAGGAATCGGCGTGGCGGTCAGCTGCATCAGATCAACGGGGAGCTACATT 296790 Query 249178 AAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCAC- 249236 || ||||| || | | || | || ||| | || || ||| | || Sbjct 296789 GCCGGCACAAACGGCAACTCAAACGGGTTAGTCCCCATGCTGAGAG--TTTACAACAACA 296732 Query 249237 CGCCAGGTTCA-TCAACCAGGCCGGGCGCCGAAAG----GGGTCGTTCGCCATGTATTTG 249291 || || ||| || |||||| ||| | | |||| || | ||||||||||| || Sbjct 296731 CGGCACGTTATGTCGACCAGGGCGG-CAACAAAAGACCCGGAGCCTTCGCCATGTACCTG 296673 Query 249292 GAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAG 249351 || ||||||| || | || || |||||||| |||| ||||||| || || ||| Sbjct 296672 GAGCCGTGGCACTTTGACGTGTTTGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAG 296613 Query 249352 CTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 ||| || | ||||| ||||||| ||||||| || |||||||||||||| Sbjct 296612 GAGCAGAGGGCCAGAGACCTTTTCTACGCCCTGTGGATCCCCGACTTGTTCATG 296559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073683661601152