Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1833 120 2e-22 seq1532 102 6e-17 seq653 82.4 6e-11 >seq1833 Length=1844611 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| |||||||||||| || |||| |||| || || || Sbjct 459688 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCTTCTAGCTG 459629 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| ||||| || | ||||| ||||| ||||| | |||||||||||| || || Sbjct 459628 CTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGGATCTT 459569 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | ||||||||||| ||| || ||||| || || Sbjct 459568 AGCCTTGACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGT 459509 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||| |||||||| ||||| ||||| Sbjct 459508 CAGGGTCTTCACGAAGATCTGCAT 459485 Score = 118 bits (130), Expect = 8e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || ||| ||||||||| |||||||||||| || ||| | || || ||||| Sbjct 459915 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGTTGC 459856 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 ||||| ||||| || | ||||| ||||| ||||| | |||||||| ||| || || Sbjct 459855 TTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTA 459796 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | |||| | ||||||||||| ||| || ||||| || ||| Sbjct 459795 GCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTTCCGGTC 459736 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || |||||||||||||| ||||| Sbjct 459735 AGGGTCTTCACAAAGATCTGCAT 459713 Score = 113 bits (124), Expect = 4e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || ||| ||||||||| |||||||||||| || ||| | || || || ||| Sbjct 459459 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGT 459400 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || ||||| || || | ||||| ||||| ||||| | |||||||| ||| || || Sbjct 459399 TTGCCGGCAAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTA 459340 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | |||| | ||||||||||| ||| || ||||| || ||| Sbjct 459339 GCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTTCCAGTC 459280 Query 45314 AGAGTCTTCACAAAGATTTGCATGTTG 45340 | |||||||||||||| ||||| ||| Sbjct 459279 AAGGTCTTCACAAAGATCTGCATCTTG 459253 >seq1532 Length=669350 Score = 102 bits (112), Expect = 6e-17 Identities = 150/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| |||||||||||| || ||| | || || | Sbjct 291615 CAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAA 291674 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | ||||| ||||| || |||| || ||| ||||| || || | || ||||| ||| | Sbjct 291675 GCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGA 291734 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| | ||| ||||| | ||| || ||||||| Sbjct 291735 TCTTAGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGC 291794 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 | || || ||||| |||||||| |||||||| Sbjct 291795 CGGTGAGGGTCTTGACAAAGATCTGCATGTT 291825 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| |||||||||||| || ||| | || || || || Sbjct 291163 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTG 291222 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||| ||||| || |||| || ||| | ||| || || | || ||||||||| || || Sbjct 291223 TTTGCCGGCAAAGATCAGCCTCTGCTTGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTT 291282 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| | ||| ||||||| ||| || |||||||| || Sbjct 291283 AGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGCCGGT 291342 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || ||||| ||||| Sbjct 291343 GAGGGTCTTGACGAAGATCTGCAT 291366 >seq653 Length=532685 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 45142 GCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGC 45201 |||| ||||||| |||||||||||| ||| ||| |||| ||||| || ||||| || Sbjct 278966 GCTCACCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCGTCCTCCAGCTGCTTTCCAGC 278907 Query 45202 GAATATCAACCGCTGTTGGTCGGGAGGCACACC 45234 ||| ||||||| ||| || |||||||| | ||| Sbjct 278906 GAAGATCAACCTCTGCTGATCGGGAGGGATACC 278874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395046242716294