Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq265 549 2e-151 seq1140 125 6e-24 seq1833 111 1e-19 seq1532 107 2e-18 >seq265 Length=606166 Score = 549 bits (608), Expect = 2e-151 Identities = 1090/1604 (68%), Gaps = 23/1604 (1%) Strand=Plus/Plus Query 22366 CTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGAT 22425 ||| | ||| ||||| ||| |||| | || || ||| ||| |||||| || Sbjct 295575 CTGAATGGATCCGTTGTTGCCGATGAGCTTGTTCTTCATCTCTTCGCTCCACAGCCCCTG 295634 Query 22426 GGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCG 22485 | |||| ||||||| ||||||| | ||||| | |||||||| || || | ||| | Sbjct 295635 CTCCGTCAGGTCTTTGAGCAGATGAGGATTCACGATCTGAAACTCTCCAGAGAGGACTCT 295694 Query 22486 GCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGC 22545 ||| ||| |||||| ||| | | ||||| ||| || ||||| ||||| ||||| || Sbjct 295695 GCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGC 295754 Query 22546 GGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAAT 22605 ||| || || || |||||||| |||| ||| || ||| |||| ||| || || | || Sbjct 295755 GGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGAT 295814 Query 22606 TTTACTCTTG-AGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATAT 22664 || ||||| |||| | ||||||| ||||||||| |||||| || |||||||| | Sbjct 295815 CTT-CTCTTTCAGCAGCTTCCAGTCCAACAGATCGGTGGGCGTC---TTCTCCCACATGT 295870 Query 22665 CGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATA 22724 |||| || | | ||| || |||| |||||||||||| ||||| || || | Sbjct 295871 CGTACTGGAGGATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCG-AGC 295929 Query 22725 TC-GCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTC 22783 || ||||| || |||||||||||||||| ||| |||| || || ||||| || |||| Sbjct 295930 TCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAATATTTGG 295989 Query 22784 TTGTTCAATTCGGCGGCGGC--GACGCTTTCGTACGGCATACGCATCATCACGAACGCGT 22841 |||||| | || ||| | | |||||| |||| |||||||| | ||| || | Sbjct 295990 ATGTTCAG--CAGCTGCGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCAT 296047 Query 22842 CCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCT 22901 |||||| ||| |||||||| || || ||||| | || | || ||| | || | Sbjct 296048 CCGCCAAACCTTGAACGCCAATTCCTATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTT 296107 Query 22902 CGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCG 22961 |||||| ||||| | || ||||| | ||||||||||| || | | ||| | Sbjct 296108 CGGGCACTGGATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTTTGACGATGACTTTGG 296167 Query 22962 TTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATT--GTACAACAAACTTGTTGAC 23019 | | | |||||| ||| | ||| | | || || |||||| Sbjct 296168 TCACGGATGCTAGTTTTTTAAAGTC--AAAAGTCCGCTCAGGGGTGACGTACATGTTGAG 296225 Query 23020 GGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTC 23079 |||||| ||||| ||||| || || || |||||||| | | ||||| || || ||||| Sbjct 296226 GGCGATGGAGGCCAGATTACAGACCGCTACCTCGTCGTCGCTGGTGTATTCAACGATTTC 296285 Query 23080 GGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCA 23139 || || || ||||| | || || ||||||| ||| ||||||||| ||||| ||||| Sbjct 296286 TGTGCAGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCA 296345 Query 23140 CGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCG 23199 | || ||||| ||||||||||||||||| || || ||| |||||||| || || | Sbjct 296346 GGCGTCTTTGTACAGCATGTACGGCGTGCCGGTTTCTGTCTGGGACTCGATAATGGCGTG 296405 Query 23200 CCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTA 23259 ||||| |||||| | || ||| | ||| || || | ||| || ||| Sbjct 296406 CCACACCTGCTGAGCCTTCACCACACGCTTGACCCTCCCCTCCTTCTCATATGAAGTGTA 296465 Query 23260 CAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACAT 23319 | | ||||| || |||| |||| ||| |||| ||||| | | | |||||||| Sbjct 296466 GAGCTTCTCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGACACTCATTGGGACACAT 296525 Query 23320 GAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGC 23379 ||| ||| | || |||| || | |||| || | || || ||||| || || Sbjct 296526 CAGAGACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAACAAGTCGGGGATCCACAGGGC 296585 Query 23380 GTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAA 23439 |||||| || || | ||| | | |||||| || || |||||||| |||| |||| || Sbjct 296586 GTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAA 296645 Query 23440 GTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATT 23499 ||| |||||||| ||||||||||| ||||| | ||| || || || ||||| || || Sbjct 296646 GTCAAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTT 296705 Query 23500 GCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACC 23559 ||||||||| ||||| ||||| |||||||||||||| ||||| ||||| || || | || Sbjct 296706 GCCGCCCTGGTCGACATAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAACCC 296765 Query 23560 GTTGGACGCGCCGCCTACGCCCGCCA---CACTCGAACCTTTTGCTCGAACGTTG-TGAA 23615 ||| || |||| | ||| || | ||| || ||| || | | | ||| Sbjct 296766 GTTTGAGTTGCCGTTTGTGCCGGCAATGTAGCTC---CCCGTTGATCTGATGCAGCTGAC 296822 Query 23616 CGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGT 23675 || | || || ||||| |||| || || || | || || || ||||||||||||| Sbjct 296823 CG-CCACGCCGATTCCTCCAGCCGACTTTGAGATGAGGGCACACTGCTTCAGAGTGTCGT 296881 Query 23676 AGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTT 23735 ||||||| ||||||||||| || || | |||| || ||| || |||| || | Sbjct 296882 AGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCC 296941 Query 23736 TGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTA 23795 || ||| |||| ||| || || || |||||| || || | | ||||| | Sbjct 296942 TGTTGGTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCA 297001 Query 23796 GATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCA 23855 | ||||| || || ||||| || || |||||| || ||| || || | || || | || Sbjct 297002 GGTTGTAGGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGATGCCAACGGAAACCCTCA 297061 Query 23856 TCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTT 23915 | | ||||| || || | ||| || |||||| || || | ||| || || || | Sbjct 297062 TGAGCATGTGCTGGGGACGTTCGGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCGCT 297121 Query 23916 GCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCG 23959 || || || || ||||| ||| ||| ||||| || ||| Sbjct 297122 CCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAGTCGCGGTCG 297165 >seq1140 Length=734468 Score = 125 bits (138), Expect = 6e-24 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 |||||||||||| |||||||||||| || || || || || ||||| | || || ||| Sbjct 320360 ACCTCGTCTTTGCTCGTGTACTCTACGATCTCTGTGCACAGGTTGCTGGATTTGATGGTG 320419 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || | |||||| | ||||||||| ||||||||||| || Sbjct 320420 CCCAGGTTCTGCTGGTTGCTCTTCCCATTGCAGGCATCCTTGTAAAGCATGTACGGGGTT 320479 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 ||||| || ||| ||||||||||| || ||||| Sbjct 320480 CCCGTTTCCGTCTGAGACTCGATGATGGCATACCACA 320516 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || || ||||||| || || || ||||| | ||| |||||| || | ||| | Sbjct 320823 TTTCCACTCGCTTCATAAAGAGGTCTGGGATCCACAAGGCGAAGAACAAGTCTCTGGCCC 320882 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 ||||||||| ||||||||||| || || || || ||||| ||||| || ||||| Sbjct 320883 TTTGCTCCTCTTTACCGGTGTTCTTCTTTAATTCTAAGAAGTCAAACACATCAAAATGCC 320942 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| ||||| || || || ||||||| Sbjct 320943 ACGGCTCCAGGTACACGGCGAAGGCCCCGGGTCTCT 320978 >seq1833 Length=1844611 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| || || || |||||| | || || || || | Sbjct 459485 ATGCAGATCTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTGGAGCCCAGC 459544 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| ||||| | || ||||||||| ||| | || || |||||| Sbjct 459545 GACACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCAG 459604 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| | |||||| | ||| | ||| || ||| Sbjct 459605 CAGCGTCTCATCTTCGCTGGAAAGCAGCTAGAAGACGGTCGCACTCTCTCCGACTACAAC 459664 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || || || || || || | |||||||| |||| Sbjct 459665 ATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGTCTGAGGGGAGGTA 459713 >seq1532 Length=669350 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || |||||| | || ||||| || | Sbjct 291594 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 291535 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| | ||| ||||||||||||| | || || |||||| Sbjct 291534 GACACCATTGAGAACGTGAAAGCTAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 291475 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||||||| | ||||| || | ||| || || Sbjct 291474 CAGAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAT 291415 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || |||||||| || || | ||||||||||||| Sbjct 291414 ATCCAGAAGGAGTCCACCCTTCATCTTGTCCTGCGTCTGAGGGGCGGTA 291366 Score = 102 bits (112), Expect = 7e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || || || ||||| || || ||||| || |||||| | || || || | Sbjct 291827 CAAACATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGC 291768 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||| | || | ||||| | || ||| ||||||||| | || || | Sbjct 291767 CCAGCGACACCATTGAGAACGTCAAGGCTAAGATCCAGGATAAGGAAGGCATTCCCCCTG 291708 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||| | || || || || ||||||||| | ||||| || | ||| | Sbjct 291707 ACCAGCAGAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGACT 291648 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| || || || || || |||||||| || || | ||||||||||||| Sbjct 291647 ACAACATCCAGAAGGAGTCCACCCTTCATCTTGTCCTGCGTCTGAGGGGCGGTA 291594 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || |||||| | || || || || | Sbjct 291366 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTCGAGCCCAGC 291307 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||||||| | || || ||| || Sbjct 291306 GACACCATTGAGAACGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCTGACAAG 291247 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||||||| | ||||| || | ||| || ||| Sbjct 291246 CAGAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 291187 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || || || || || || || || | || ||||||||| Sbjct 291186 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAGGGGCGGT 291139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445732889510880