Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq265 484 8e-132 seq2005 96.9 4e-15 seq714 96.9 4e-15 seq1140 84.2 3e-11 >seq265 Length=606166 Score = 484 bits (536), Expect = 8e-132 Identities = 1255/1904 (66%), Gaps = 33/1904 (2%) Strand=Plus/Plus Query 62370 AGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTA 62429 || ||||| || || || | || || |||||||| | ||||| || ||||| || || Sbjct 295651 AGCAGATGAGGATTCACGATCTGAAACTCTCCAGAGAGGACTCTGCGGGTGTAGATGTTG 295710 Query 62430 CTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 62489 ||||| || | ||| | ||||| || || |||| || || || || || || || ||| Sbjct 295711 CTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAGGCCGTGGGC 295770 Query 62490 ATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGT 62549 || || |||| || | || || || | || | | | ||| || ||||| || | Sbjct 295771 ATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCTTTCAGCAGC 295830 Query 62550 TCCCAATTCCAAAGATCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAAT 62602 | ||| | | | ||||| | || | | ||| || || || || Sbjct 295831 TTCCAGTCCAACAGATCGGTGGGCGTCTTCTCCCACATGTCG-------TACTGGAGGAT 295883 Query 62603 ACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTT 62662 || || ||| | || ||| | || || || || || || || | || || | Sbjct 295884 GCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGCTC 295943 Query 62663 ACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTG 62722 || |||||||| | || |||| || ||||| ||||| || | | || || || Sbjct 295944 GCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAATATTTGGATGTTCAGCAGCTG 296003 Query 62723 TGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAAC 62782 || || ||||| ||||| || ||| | || || || || ||||| || |||||||| Sbjct 296004 CGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATCCGCCAAACCTTGAAC 296063 Query 62783 ACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATA 62842 ||||| || || || || || | ||| || || | || ||||| || | ||||| | Sbjct 296064 GCCAATTCCTATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCGGGCACTGGATAGAA 296123 Query 62843 ATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCAC--ATCCTTCAGT 62900 ||||| || || || || || | ||| |||| || |||||| ||| || || ||| Sbjct 296124 GTTAATCTCGATGATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACGGATGCT--AGT 296181 Query 62901 TTGAGAAAATCAAAT---CGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGA 62957 || ||| ||||| ||| || | || ||||||| | || | || |||||| Sbjct 296182 TTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTACATGTTGAGGGCGATGGAGGCCAGA 296241 Query 62958 TTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 63017 ||||| || |||||||| | | | |||| | || || ||||| || || || Sbjct 296242 TTACAGACCGCTACCTCGTCGTCGCTGGTGTATTCAACGATTTCTGTGCAGAGGTTGCTG 296301 Query 63018 CACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 63077 | ||||| || || | ||| || || || |||||| ||| || || || || || || Sbjct 296302 CTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGGCGTCTTTGTACAGC 296361 Query 63078 ATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCC 63137 ||| | || || || ||||| |||| || || ||||| || | ||| || ||||| Sbjct 296362 ATGTACGGCGTGCCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCACACCTGCTGAGCC 296421 Query 63138 TTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCG 63197 || | | | ||| |||| || | || ||| ||| || | || ||||| Sbjct 296422 TTCACCACACGCTTGACCCTCCCCTCCTTCTCATATGAAGTGTAGAGCTTCTCAAACTCC 296481 Query 63198 TCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCG 63257 || |||||| | ||||| | ||||| |||| |||||||||| ||||| ||| | Sbjct 296482 TCACCCCAACACTCGTCCAGCCCGGGACACTCATTGGGACACATCAGAGACCAGTCTTGG 296541 Query 63258 TCATCCTT--CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCT 63314 | | ||| ||||| ||||| || | || || ||||| || || || ||| || ||| Sbjct 296542 T--TGCTTTCCACTCTCTTCATGAACAAGTCGGGGATCCACAGGGCGTAGAAA-AGGTCT 296598 Query 63315 CTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCA 63374 || | || || ||||| |||||||| ||||| || || || ||||| | | | ||| Sbjct 296599 CTGGCCCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCA 296658 Query 63375 GAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCT 63434 | |||||||| |||| ||| ||||| | |||| || | |||||| || ||||| || Sbjct 296659 AAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTGCCGCCCTGGTCG 296718 Query 63435 ATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCA 63494 | || | || ||||| || |||||||||| ||| || | | |||||||| | || Sbjct 296719 ACATAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAACCCGTTTGAGTTGCCG 296778 Query 63495 TTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCC 63554 || || |||| || |||| || | | | || || | | | || ||||| Sbjct 296779 TTTGTGCCGGCAATGTAGCTCCCCGTTGATCTGATGCAGCTGACCGCCACGCCGATTCCT 296838 Query 63555 CCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTA 63614 || ||| || ||||| | || || | || | ||||| ||||||||||| ||||| Sbjct 296839 CCAGCCGACTTTGAGATGAGGGCACACTGCTTCAGAGTGTCGTAGATGCCTTCGATGCTG 296898 Query 63615 TCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTA 63674 || || ||||| || || || ||||| |||| || | | | || || ||||| Sbjct 296899 TCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTACCGGCATTG 296958 Query 63675 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATA 63734 || | ||||| || ||||| || ||||| || || || || || ||||| |||||||| Sbjct 296959 AAGAGAGTAGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATG 297018 Query 63735 GCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGT 63794 |||| ||| || ||| | || || || || | || | ||| | ||||||||| || Sbjct 297019 GCTGCGTCGATGTCCGTTCTGTGGATGCCAACGGAAACCCTCATGAGCATGTGCTGGGGA 297078 Query 63795 CTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCA 63854 | ||| | | |||| ||| || |||| || |||||| |||| ||| || || ||| Sbjct 297079 CGTTCGGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCGCTCCAGAGTCTTGAAGCCA 297138 Query 63855 AAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATAT 63914 || ||||||| || ||||| || ||| |||| || | || ||||| || || | Sbjct 297139 AAGAAGTTGTAGGAGAAGTCGCGGTCGAAAATGATGGCGGAGTTGAGGCGGTCTTTGTTC 297198 Query 63915 TTGTTAACTATATCCATGGTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTA-- 63971 | | || || || | || | ||| || || || ||||| || | | || | Sbjct 297199 TCCTGGACAATGTCGAGCGT-CTCCTTGGAGATCATGGGAGA--GTGGCGTTTGTTCAAG 297255 Query 63972 GGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTG 64031 || || || |||||| | | |||||||||||||| || || | || || || || ||| Sbjct 297256 GGGTTGACGTAGTTGTACAGGTCCTCCATCACTTCGCTGAACACCTTCTTGGTCTCTTTG 297315 Query 64032 TGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTA 64091 || || ||||| | ||| || | ||||| || || ||||| || || |||| || || Sbjct 297316 TGCAGGTTTGAGACGGCGATCCGAGCGGCAAGGATTGCATAGTCGGGGTGTTTGGTTGTG 297375 Query 64092 CAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATAT 64151 |||||| || || || || ||||| ||||| | || || || || || || | || Sbjct 297376 AGAGTGGCGGCGATCTCAGCCGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTAC 297435 Query 64152 ATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCA 64211 | || ||||| |||||||| | || | ||||| | | || | ||| | || Sbjct 297436 AAACCCTGAATCACCTTCATCGTAATCTGGGCCGGATCCACAAAGTCAGAGTTCAGCCCG 297495 Query 64212 TAGCACAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 64255 ||||||| || || || || ||||||||||| |||||||| Sbjct 297496 TAGCACAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGAC 297539 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || ||||| || || |||||| || |||| || || || ||||| | Sbjct 295311 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTCGGCTCCGCGATGTGGATGT 295370 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| || || || || ||||||||||| || | ||| || ||||| || | | |||| Sbjct 295371 TCAGGGACTGGCTCTGGTCGATGAAGGCGCCGCGGTCGGCTGCCATCTTGAGCACGGTCT 295430 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62281 | || | || ||||| | |||||||| | |||| | ||| ||||| Sbjct 295431 TCTGGGAGATCTCCCACACGGTTTTATACAGCTGCTTCAGATCGTCTGG 295479 >seq2005 Length=666128 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | ||||| || || || || |||||||| ||||| | ||| | Sbjct 130850 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 130791 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||| |||||| || || || ||||||||||| || || || || |||| Sbjct 130790 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGG 130731 Query 33724 C 33724 | Sbjct 130730 C 130730 >seq714 Length=827726 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| || || ||||| | || || || || || || ||||||||||| || | ||| | Sbjct 573723 CCTCATCCCTGCTAATCAGCTCATTGGAGAAGGTAAGACCGGGCATTAGCCCTCTCTTCT 573782 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||| | |||| ||||||||| || || |||||||| || || ||||| || || | Sbjct 573783 TGAGCCAATAGATGGCAGCGAATGAGCCTGAGAAGAAGATACCCTCCACTGCTGCGAAAG 573842 Query 33724 CAATAAGTCTCTCTCC 33739 | | |||||||| || Sbjct 573843 CCACGAGTCTCTCCCC 573858 >seq1140 Length=734468 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||| || | ||| || || || ||||| | || || | || |||| ||||| || | Sbjct 322261 CACTGAACACTTTCTTGGTCTCTTTGTGCAAGTTAGACACAGCGATTCGTGCGGCGAGGA 322320 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 || || || ||||||| || || |||||| || | || |||||||||||||||| Sbjct 322321 GTGCGTAGTCGGGATGTTTGGTGGTTAGAGTGGCGGCGGTCTCTGCTGCCAGAGTGTCCA 322380 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 ||||| || || |||||| | || | || || || |||||||| Sbjct 322381 GCTCTACTGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 322426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629770253461920