Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2005 91.5 1e-13 >seq2005 Length=666128 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/146 (75%), Gaps = 3/146 (2%) Strand=Plus/Minus Query 11644 ATGTAA--ACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAAT 11701 |||||| |||| ||||||| || || || || || || || || | |||||||||| Sbjct 130859 ATGTAATGACCT-CGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGG 130801 Query 11702 CCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACA 11761 |||| || || | ||| || || ||||| || |||||||| ||||| ||||||||||| Sbjct 130800 CCTCTCTTCTTCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACG 130741 Query 11762 GCTGCAAATGCTACTACTCTTTCTCC 11787 || || || || || || | ||||| Sbjct 130740 GCGGCGAAGGCCACCACGCGCTCTCC 130715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468489578648160