Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq265 489 2e-133 seq1140 93.3 6e-14 seq714 87.8 2e-12 >seq265 Length=606166 Score = 489 bits (542), Expect = 2e-133 Identities = 1307/1980 (66%), Gaps = 33/1980 (2%) Strand=Plus/Plus Query 65087 CTGAATGGATCCACCATCTGCC-ATAATCCTATTCTTGATCTCATCATTCCATAATTTTC 65145 |||||||||||| | |||| || | | | ||||| ||||| || |||| | Sbjct 295575 CTGAATGGATCCGTTGT-TGCCGATGAGCTTGTTCTTCATCTCTTCGCTCCACAGCCCCT 295633 Query 65146 TCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTC 65205 ||| || | || | || ||||| ||||| || | ||||| |||||||| | |||| Sbjct 295634 GCTCCGTCAGGTCTTTGAGCAGATGAGGATTCACGATCTGAAACTCTCCAGAGAGGACTC 295693 Query 65206 TCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAG 65265 | || ||||| || || ||||| || | ||| | |||||| || || |||| || || | Sbjct 295694 TGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTG 295753 Query 65266 CAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGA 65325 | || || || || ||||| || |||| || | || || || | || | | | || Sbjct 295754 CGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGA 295813 Query 65326 TTTTATCTTTTAG-AGGTTCCCAATTCCAA-AGATCCGACGGTACAACNNNNNNNNNNNN 65383 | || ||||| || || |||| | ||||| ||||| | || | | Sbjct 295814 TCTTCTCTTTCAGCAGCTTCC--AGTCCAACAGATCGGTGGG--CGTCTTCTCCCACATG 295869 Query 65384 NNNT--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCC 65441 | || || || || || ||| | || ||| | || || ||||| || || | Sbjct 295870 TCGTACTGGAGGATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGC 295929 Query 65442 TTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTC 65501 | | || || || || |||||||| | || |||| || ||||| || || || | Sbjct 295930 TCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAATATTTGG 295989 Query 65502 TTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCT 65561 | || || || || || |||| ||||| || ||| | || || || || || Sbjct 295990 ATGTTCAGCAGCTGCGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATCC 296049 Query 65562 GCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCT 65621 || || |||||||| ||||| || || || || || | ||| || || | || ||||| Sbjct 296050 GCCAAACCTTGAACGCCAATTCCTATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCG 296109 Query 65622 GGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACC 65681 || | ||||| | ||||| || || || || || | ||| |||| || |||||| | Sbjct 296110 GGCACTGGATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTTTGACGATGACTTTGGTC 296169 Query 65682 AC--ATCCTTCAGTTTGAGAAAATCAAAT---CGCTCATCTATTACAAACATGTTCAATG 65736 || || || ||||| ||| ||||| |||||| | || ||||||| | | Sbjct 296170 ACGGATGCT--AGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTACATGTTGAGGG 296227 Query 65737 CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAG 65796 | | || ||||||||||| || |||||||| | | | |||| | || || | Sbjct 296228 CGATGGAGGCCAGATTACAGACCGCTACCTCGTCGTCGCTGGTGTATTCAACGATTTCTG 296287 Query 65797 TGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 65856 |||| || || || | ||||| || || | ||| || || || |||||| ||| || | Sbjct 296288 TGCAGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGG 296347 Query 65857 CATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCC 65916 | || || || || ||| | || || || ||||| |||| || || ||||| || | || Sbjct 296348 CGTCTTTGTACAGCATGTACGGCGTGCCGGTTTCTGTCTGGGACTCGATAATGGCGTGCC 296407 Query 65917 AGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTAT--AGTGTATA 65974 | || ||||||| | | | ||| ||| || | || ||| |||||| | Sbjct 296408 ACACCTGCTGAGCCTTCACCACACGCTTGACCCTCCCCTCCTTCTCATATGAAGTGTAGA 296467 Query 65975 CAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACAT 66034 || || ||||| || |||||| | ||||| || ||||| |||| |||||||| Sbjct 296468 GCTTC--TCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGACACTCATTGGGACACAT 296525 Query 66035 CAACGACCACTCTCCGTCATCCTT--CACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 66092 || ||||| ||| || | ||| ||||| ||||| || | || || ||||| || Sbjct 296526 CAGAGACCAGTCTTGGT--TGCTTTCCACTCTCTTCATGAACAAGTCGGGGATCCACAGG 296583 Query 66093 GC-TATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 66151 || || ||| | ||||||| || || ||||| |||||||| ||||| || || || || Sbjct 296584 GCGTAGAAA-AGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAG 296642 Query 66152 GAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 66211 ||| | | | ||| | |||||||| |||| ||| ||||| | |||| || | ||| Sbjct 296643 GAAGTCAAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTT 296702 Query 66212 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 66271 ||| || ||||| || | || | || ||||| || |||||||||| ||| || | | Sbjct 296703 GTTGCCGCCCTGGTCGACATAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAA 296762 Query 66272 ACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAAT 66331 || || || | || || || |||| || ||||| || ||| | || || | Sbjct 296763 CCCGTTTGAGTTGCCGTTTGTGCCGGCAATGTAGCTCCCCGTTGATCTGATGCAGCTGAC 296822 Query 66332 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 66391 | | || ||||| || ||| || ||||| | || || | || | || || || Sbjct 296823 CGCCACGCCGATTCCTCCAGCCGACTTTGAGATGAGGGCACACTGCTTCAGAGTGTCGTA 296882 Query 66392 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 66451 |||||| || || || || ||| ||||| || || || ||||| |||| || | | Sbjct 296883 GATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCT 296942 Query 66452 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 66511 | || || ||||| || | ||||| || ||||| || ||||| || || || || || Sbjct 296943 GTTGGTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAG 297002 Query 66512 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 66571 ||||| |||||||| |||| ||| || ||| | || || || || | || | ||| Sbjct 297003 GTTGTAGGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGATGCCAACGGAAACCCTCAT 297062 Query 66572 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 66631 | ||||||||| || | ||| | | ||| ||| || |||| || |||||| || Sbjct 297063 GAGCATGTGCTGGGGACGTTCGGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCGCTC 297122 Query 66632 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 66691 || ||| || || ||||| ||||||| || ||||| || ||| |||| || | ||||| Sbjct 297123 CAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAGTCGCGGTCGAAAATGATGGCGGAGTT 297182 Query 66692 GAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATCGGAGAAT 66750 ||| || || | | | || | || | || | ||| || || || ||||| Sbjct 297183 GAGGCGGTCTTTGTTCTCCTGGACAATGTCGAGCGT-CTCCTTGGAGATCATGGGAGA-- 297239 Query 66751 GTTTCCCATTTTTA--GGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG 66808 || | | || | || ||||| |||||| | | |||||||||||||| || || | Sbjct 297240 GTGGCGTTTGTTCAAGGGGTTGACGTAGTTGTACAGGTCCTCCATCACTTCGCTGAACAC 297299 Query 66809 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATC 66868 || || || |||||||| || ||||| ||||| || | |||||| | || ||||| || Sbjct 297300 CTTCTTGGTCTCTTTGTGCAGGTTTGAGACGGCGATCCGAGCGGCAAGGATTGCATAGTC 297359 Query 66869 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 66928 || |||| || || |||||| || || || || ||||| ||||| | || || || Sbjct 297360 GGGGTGTTTGGTTGTGAGAGTGGCGGCGATCTCAGCCGCCAGCGTGTCGAGCTCCACGGT 297419 Query 66929 TGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATG 66988 || || || | || | || || || |||||||| | || | ||||| | | Sbjct 297420 GGTGACGCCGCTGTACAAACCCTGAATCACCTTCATCGTAATCTGGGCCGGATCCACAAA 297479 Query 66989 ATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGAC 67048 |||| ||| | || || || | || || || || ||||||||||| |||||||| Sbjct 297480 GTCAGAGTTCAGCCCGTAGCACAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGAC 297539 Score = 89.7 bits (98), Expect = 7e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || ||||| || || |||||| || |||| || || || ||||| | Sbjct 295311 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTCGGCTCCGCGATGTGGATGT 295370 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| || || || || ||||||||||| || | ||| || ||||| || | | |||| Sbjct 295371 TCAGGGACTGGCTCTGGTCGATGAAGGCGCCGCGGTCGGCTGCCATCTTGAGCACGGTCT 295430 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 65074 | || | || ||||| | |||||||| | |||| | ||| ||||| Sbjct 295431 TCTGGGAGATCTCCCACACGGTTTTATACAGCTGCTTCAGATCGTCTGG 295479 >seq1140 Length=734468 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| || || |||||||| | || || || || |||| ||||| | | Sbjct 322261 CACTGAACACTTTCTTGGTCTCTTTGTGCAAGTTAGACACAGCGATTCGTGCGGCGAGGA 322320 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 || || || ||||||| || || |||||| || | || |||||||||||||||| Sbjct 322321 GTGCGTAGTCGGGATGTTTGGTGGTTAGAGTGGCGGCGGTCTCTGCTGCCAGAGTGTCCA 322380 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||||| || || |||||| | || | || ||||| |||||||| Sbjct 322381 GCTCTACTGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 322426 >seq714 Length=827726 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| || || ||||| | || ||||| || || || ||||||||||| || | ||| | Sbjct 573723 CCTCATCCCTGCTAATCAGCTCATTGGAGAAGGTAAGACCGGGCATTAGCCCTCTCTTCT 573782 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||| | |||| || ||||| || || ||||| || || || ||||| || || | Sbjct 573783 TGAGCCAATAGATGGCAGCGAATGAGCCTGAGAAGAAGATACCCTCCACTGCTGCGAAAG 573842 Query 36300 CAATAAGTCTCTCTCC 36315 | | |||||||| || Sbjct 573843 CCACGAGTCTCTCCCC 573858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658123321859760