Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq32 168 5e-37 seq1531 165 6e-36 seq1486 150 1e-31 >seq32 Length=80032 Score = 168 bits (186), Expect = 5e-37 Identities = 400/595 (67%), Gaps = 21/595 (4%) Strand=Plus/Minus Query 68577 CCTGCGGGTGGTTGTAATCAAGCACGCCGGAGCCGTGCGCAATAAACTGAAAGAAAAAGC 68636 ||| || ||| || ||||| || || ||||||| || | |||| | ||| || Sbjct 13372 CCTTCGTCTGGCCGTGATCAACCATGCTCCCGCCGTGCTGAAGGAGCTGAGACGAAAGGC 13313 Query 68637 TTCTCTG-GAACGCAAGCGGCAGTACGTGTCGTTCCTCGACGGGAACGGCGGCAACGCCG 68695 || || || | |||| |||||||| ||||| || ||| | |||||||| ||||| Sbjct 13312 C-CTGTGCGAGCACAAGGACCAGTACGTTTCGTTTCTGGACAGTAACGGCGGGAACGCAA 13254 Query 68696 TCATGTACGCGGACATGGACATTGTGTTCACCTGTGACAAAGTTCCTAC-GGTATACGCA 68754 ||||||| ||||||||||||| ||||||||| |||| || || ||| | |||| Sbjct 13253 TCATGTATCCGGACATGGACATCGTGTTCACCGCAGACAGGGTGCCCCGTGGTGTGCGCA 13194 Query 68755 AAAGACGGGCTGTGTTCTTATCCGGAACTACACAAGGTCTTT--TTGGGCGACC---CCC 68809 || | || |||| || || || || | |||| ||||| || || || | Sbjct 13193 AAGAATGGCATGTGCTCGTACCCTGAGCCCAACAATATCTTTATTTAGGGAACATGTCTG 13134 Query 68810 ATGTGG-----AACGGCCACCGTGGCTGAAGGAGAAAATGGCAAAACACGCCGCCGTCTT 68864 ||| || | | | | ||| | || | | |||| || || | || || ||| || Sbjct 13133 ATGAGGTTGACATCAGTC-CCGAG-CTCATGAAGAAGATAACAGACCATTCCAGCGTGTT 13076 Query 68865 TCGGCGAGACTGGAAAGACATCGCGCAATACATCATTCGCGACGGTGGATACGCCGTGGC 68924 | | |||||| ||| |||| | | |||||||| || ||| | |||| |||||| Sbjct 13075 CGAGAGGGACTGGGAAGCCATCACCAATTACATCATGCGTGACAAGGCGTACGACGTGGC 13016 Query 68925 GGCTGACATTTACAAGGATCTGGGGCGACAGTACAAGCCGTGCGTGGCCACGGGAGAGAA 68984 | | || || ||| |||||| || | ||||| || |||||||| ||||||||| Sbjct 13015 CACCGCTATCACCAGGGAGCTGGGGAGAAAATACAACCCTTGCGTGGCTCGGGGAGAGAA 12956 Query 68985 CTGCATGCTGCTGGTTGCGTACGAGTCGGTGCCGTTGTTTTGGCGGCTGGTGTCG---AA 69041 ||||||||||||||| |||||| ||||| || |||| || | || ||| || Sbjct 12955 CTGCATGCTGCTGGTGGCGTACTCTTCGGTACCCCTGTTCAGGACGTGTGTCTCGGGCAA 12896 Query 69042 CTCCAGCCTCATTATTGACTTCCACAGCATAGACACGCCGTTGCGTTGCGAGAACCACAC 69101 ||| | | ||| | ||| | ||| | | | |||| ||| | | ||||||||||| Sbjct 12895 CTCTA---TGATTGTCGACCTGCACCGTACAAACACAGAGTTCTATCGGGAGAACCACAC 12839 Query 69102 GTTAATCTACCTGCAGCTCCTTCCTTACATGGTACACAGGGGAGATCGCACTTGG 69156 | |||||| ||||| | | || |||||| ||||| | | |||| ||||||| Sbjct 12838 TCTGATCTACTTGCAGTTGATACCGTACATGAAACACATGAGCGATCACACTTGG 12784 >seq1531 Length=365363 Score = 165 bits (182), Expect = 6e-36 Identities = 179/235 (76%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 91799 CATTTCCCTGTCTTTTCCTGCAAAGAGGACTACAACATCATCATGGACACTGTCAGACAA 91858 || ||||| ||| ||| | |||||||||||||||||||||| ||||| | | | ||| Sbjct 192269 CACTTCCCCACCTTCTCCAGGAAAGAGGACTACAACATCATCACAGACACAG-CGGCCAA 192211 Query 91859 -CTGGAACAAAGTGGCTTCTACTGGGGTCCTTTGGGGGTCGAGGAGGCACATCGTATGCT 91917 || || | || |||||||||||||||||| |||| || ||||| || ||||| ||| | Sbjct 192210 GCTTGAGCGCAGCGGCTTCTACTGGGGTCCTCTGGGAGTGGAGGACGCCCATCGCATGTT 192151 Query 91918 GCGCAACTCGGCACTGGGCAGCTTTCTCATTCGGGATAGCAGGCAAAAGGACGTCTTGTT 91977 ||| || | | ||||| ||||| ||||| || || ||| | || || |||||||| || Sbjct 192150 GCGGGACGCTCCTCTGGGAAGCTTCCTCATCCGTGACAGCCGTCAGAAAGACGTCTTCTT 192091 Query 91978 CACGCTGTCGTATCACTCTGTGACCGGACCCGTCAGTGTGAGGATTGAATACAAG 92032 ||||||||| || ||| | || ||| || ||||| ||| | || || |||||| Sbjct 192090 CACGCTGTCCTACCACGCCAAGAGCGGTCCGGTCAGCGTGCGCATCGACTACAAG 192036 >seq1486 Length=460680 Score = 150 bits (166), Expect = 1e-31 Identities = 397/595 (67%), Gaps = 22/595 (4%) Strand=Plus/Minus Query 68577 CCTGCGGGTGGTTGTAATCAAGCACGCCGGAGCCGTGCGCAATAAACTGAAAGAAAAAGC 68636 ||| || ||| || ||||| || || ||||||| || | |||| | ||| || Sbjct 324196 CCTTCGTCTGGCCGTGATCAACCATGCTCCCGCCGTGCTGAAGGAGCTGAGACGAAAGGC 324137 Query 68637 TTCTCTG-GAACGCAAGCGGCAGTACGTGTCGTTCCTCGACGGGAACGGCGGCAACGCCG 68695 || || || | |||| |||||||| ||||| || ||| | |||||||| ||||| Sbjct 324136 C-CTGTGCGAGCACAAGGACCAGTACGT-TCGTTTCTGGACAGTAACGGCGGGAACGCAA 324079 Query 68696 TCATGTACGCGGACATGGACATTGTGTTCACCTGTGACAAAGTTCCTAC-GGTATACGCA 68754 ||||||| ||||||||||||| ||||||||| |||| || || ||| | |||| Sbjct 324078 TCATGTATCCGGACATGGACATCGTGTTCACCGCAGACAGGGTGCCCCGTGGTGTGCGCA 324019 Query 68755 AAAGACGGGCTGTGTTCTTATCCGGAACTACACAAGGTCTTT--TTGGGCGACC---CCC 68809 || | || |||| || || | || | |||| ||||| || || || | Sbjct 324018 AAGAATGGCATGTGCTCGTACTCTGAGCCCAACAATATCTTTATTTAGGGAACATGTCTG 323959 Query 68810 ATGTGG-----AACGGCCACCGTGGCTGAAGGAGAAAATGGCAAAACACGCCGCCGTCTT 68864 ||| || | | ||| ||| | || | | |||| || || | || || ||| || Sbjct 323958 ATGAGGTTGACATCAGCC-CCGAG-CTCATGAAGAAGATAACAGACCATTCCAGCGTGTT 323901 Query 68865 TCGGCGAGACTGGAAAGACATCGCGCAATACATCATTCGCGACGGTGGATACGCCGTGGC 68924 | | |||||| ||| | || | | |||||||| || ||| | |||| |||||| Sbjct 323900 CGAGAGGGACTGGGAAGCCGTCACCAATTACATCATGCGTGACAAGGCGTACGACGTGGC 323841 Query 68925 GGCTGACATTTACAAGGATCTGGGGCGACAGTACAAGCCGTGCGTGGCCACGGGAGAGAA 68984 | | || || ||| |||||| || | ||||| || |||||||| ||||||||| Sbjct 323840 CACCGCTATCACCAGGGAGCTGGGGAGAAAATACAACCCTTGCGTGGCTCGGGGAGAGAA 323781 Query 68985 CTGCATGCTGCTGGTTGCGTACGAGTCGGTGCCGTTGTTTTGGCGGCTGGTGTCG---AA 69041 ||||||||||||||| |||||| ||||| || |||| || | || ||| | Sbjct 323780 CTGCATGCTGCTGGTGGCGTACTCTTCGGTACCCCTGTTCAGGACGTGTGTCTCGGGCGA 323721 Query 69042 CTCCAGCCTCATTATTGACTTCCACAGCATAGACACGCCGTTGCGTTGCGAGAACCACAC 69101 ||| | | ||| | ||| | ||| | | | ||| ||| | | ||||||||||| Sbjct 323720 CTCTA---TGATTGTCGACCTGCACCGTACAATCACAGAGTTCTATCGGGAGAACCACAC 323664 Query 69102 GTTAATCTACCTGCAGCTCCTTCCTTACATGGTACACAGGGGAGATCGCACTTGG 69156 | |||||| ||||| | | || |||||| ||||| | | |||| ||||||| Sbjct 323663 TCTGATCTACTTGCAGTTGATACCGTACATGAAACACATGAGCGATCACACTTGG 323609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356207489635642