Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1833 105 7e-18 seq1532 96.9 3e-15 >seq1833 Length=1844611 Score = 105 bits (116), Expect = 7e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | |||| |||||| ||||| || ||| Sbjct 459681 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCTTCTAGCTGCTTTCCA 459622 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||| ||||| || ||||| ||||| || ||||| ||| || || Sbjct 459621 GCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTG 459562 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | |||||| ||||||||||||| | ||| | ||||| || |||| || Sbjct 459561 ACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTC 459502 Query 139748 TTTACGAATATTTGCATAGCT 139768 || ||||| || |||||| || Sbjct 459501 TTCACGAAGATCTGCATACCT 459481 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | |||| || ||||||||||| || Sbjct 459453 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGTTTGCCG 459394 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| ||||| ||||| || ||||| ||||| || || || ||| || || Sbjct 459393 GCAAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTAGCCTTG 459334 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| ||||||||||||| | ||| | ||||| || ||||| || Sbjct 459333 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTTCCAGTCAAGGTC 459274 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 459273 TTCACAAAGATCTGCAT 459257 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | |||| || || || || || ||| Sbjct 459909 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGTTGCTTTCCA 459850 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||| ||||| || ||||| ||||| || || || ||| || || Sbjct 459849 GCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTAGCCTTC 459790 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| ||||||||||||| | ||| | ||||| ||||||| || Sbjct 459789 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTTCCGGTCAGGGTC 459730 Query 139748 TTTACGAATATTTGCATAGCT 139768 || || || || |||||| || Sbjct 459729 TTCACAAAGATCTGCATACCT 459709 >seq1532 Length=669350 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || ||||| | | ||||| || | ||| | || ||||| || || ||||| || ||| Sbjct 291137 TGACCGCCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 291196 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | |||| ||||| |||||||| || ||| ||||||| | |||| || || Sbjct 291197 GAGAGGGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTTGTCAGGG 291256 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || |||||||| ||||| ||| || || | | || | |||||| ||||||| Sbjct 291257 GGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCG 291316 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | ||| | ||||||||||| | || || ||||| || |||||| Sbjct 291317 ACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 291367 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| | | ||||| || | |||| || ||||| || || ||||| || ||| Sbjct 291596 CCGCCCCTCAGACGCAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 291655 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| |||||||| || ||| ||||||| | ||||| || || || Sbjct 291656 AGGGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 291715 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| || || ||| || || | | || | |||||| ||||||| ||| Sbjct 291716 ATGCCTTCCTTATCCTGGATCTTAGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACC 291775 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | ||||||||||| | || || || || || ||||| Sbjct 291776 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 291822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496026708388800