Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq265 491 6e-134 seq2005 111 2e-19 seq714 102 1e-16 seq1140 87.8 3e-12 >seq265 Length=606166 Score = 491 bits (544), Expect = 6e-134 Identities = 1311/1979 (66%), Gaps = 31/1979 (2%) Strand=Plus/Plus Query 78966 CTGAATGGATCCACCATCTGCC-ATAATCCTATTCTTGATCTCTTCATTCCATAATTTTC 79024 |||||||||||| | |||| || | | | ||||| |||||||| |||| | Sbjct 295575 CTGAATGGATCCGTTGT-TGCCGATGAGCTTGTTCTTCATCTCTTCGCTCCACAGCCCCT 295633 Query 79025 TCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTC 79084 ||| || | || | || ||||| ||||| || | ||||| |||||||| | |||| Sbjct 295634 GCTCCGTCAGGTCTTTGAGCAGATGAGGATTCACGATCTGAAACTCTCCAGAGAGGACTC 295693 Query 79085 TCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAG 79144 | || ||||| || || ||||| || | ||| | || || || || |||| || || | Sbjct 295694 TGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTG 295753 Query 79145 CAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGA 79204 | || || ||||| ||||| || |||| || | || || || | || | | || Sbjct 295754 CGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGA 295813 Query 79205 TTTTATCTTTTAG-AGATTCCCAATCCCAAAGATCAGACGG-GACAACATTCCAAAGATC 79262 | || ||||| || || |||| | ||| | ||||| | || | | | | ||| | || Sbjct 295814 TCTTCTCTTTCAGCAGCTTCC-AGTCCAACAGATCGGTGGGCGTCTTC-TCCCACATGTC 295871 Query 79263 ATATTGTAGAATACCGTTACT-AGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCT 79321 || || || || || || || | || | || ||| ||| || || || || || || Sbjct 295872 GTACTGGAGGATGCCCTTGCTGACCGGA-GAGCCTTCGTACGTCTCGTAGGGGCCGAGCT 295930 Query 79322 TTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCT 79381 |||| | || || |||||||| | || |||| || ||||| || || || | Sbjct 295931 CAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAATATTTGGA 295990 Query 79382 TATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTG 79441 | || || || || || |||| ||||| || ||| | || || || || || | Sbjct 295991 TGTTCAGCAGCTGCGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATCCG 296050 Query 79442 CTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTG 79501 | || |||||||| ||||| || || || || || | ||| || || | || ||||| | Sbjct 296051 CCAAACCTTGAACGCCAATTCCTATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCGG 296110 Query 79502 GAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCA 79561 | | ||||| | ||||| || || || || || | || |||| || |||||| || Sbjct 296111 GCACTGGATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTTTGACGATGACTTTGGTCA 296170 Query 79562 C--ATCCTTTAGTTTGAGAAAATCAAAT---CGTCCATCTATTACAAACATGTTCAACGC 79616 | || || ||||| ||| ||||| || || | || ||||||| | || Sbjct 296171 CGGATGCT--AGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTACATGTTGAGGGC 296228 Query 79617 GACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGT 79676 || || ||||||||||| || |||||||| | | | |||| | ||||| || Sbjct 296229 GATGGAGGCCAGATTACAGACCGCTACCTCGTCGTCGCTGGTGTATTCAACGATTTCTGT 296288 Query 79677 GCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGC 79736 ||||||||| || | || || || || | ||| || || || |||||| ||| || || Sbjct 296289 GCAGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGGC 296348 Query 79737 ATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 79796 || || || || ||| |||| || || ||||| |||| || || ||||| || | ||| Sbjct 296349 GTCTTTGTACAGCATGTACGGCGTGCCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCA 296408 Query 79797 GACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTAT--TGTGTATAT 79854 || ||||||| | | | |||| ||| || | || ||| ||||| | Sbjct 296409 CACCTGCTGAGCCTTCACCACACGCTTGACCCTCCCCTCCTTCTCATATGAAGTGTAGAG 296468 Query 79855 AATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATC 79914 || || ||||| || |||||| ||||| | || ||||| || | ||||||||| Sbjct 296469 CTTC--TCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGACACTCATTGGGACACATC 296526 Query 79915 AACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 79972 | ||||| ||| | | |||| |||| ||||| || | || || ||||| || | Sbjct 296527 AGAGACCAGTCTTGGT--TGCTTTCCACTCTCTTCATGAACAAGTCGGGGATCCACAGGG 296584 Query 79973 C-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 80031 | || ||| || ||||||| || |||||||| |||||||| ||||| || || || ||| Sbjct 296585 CGTAGAAA-AGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGG 296643 Query 80032 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTG 80091 || | | | ||| | |||||||| |||| ||| ||||| | |||| |||| |||| Sbjct 296644 AAGTCAAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTG 296703 Query 80092 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 80151 || || ||||| || | || | || ||||| || |||||||||| ||| || | | Sbjct 296704 TTGCCGCCCTGGTCGACATAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAAC 296763 Query 80152 CCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATT 80211 || || || | || || || |||| || ||||| || | | | || || | Sbjct 296764 CCGTTTGAGTTGCCGTTTGTGCCGGCAATGTAGCTCCCCGTTGATCTGATGCAGCTGACC 296823 Query 80212 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 80271 | | || ||||| || ||| || ||||| | || || | || | || || ||| Sbjct 296824 GCCACGCCGATTCCTCCAGCCGACTTTGAGATGAGGGCACACTGCTTCAGAGTGTCGTAG 296883 Query 80272 ATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 80331 ||||| || ||||| || || ||||| || || || ||||| |||| || | | Sbjct 296884 ATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTG 296943 Query 80332 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGA 80391 | || || ||||| || | ||||| || ||||| || ||||| || || ||||| || Sbjct 296944 TTGGTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGG 297003 Query 80392 TTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATT 80451 ||||| |||||||| |||| || || ||| | || || || || | || | ||| Sbjct 297004 TTGTAGGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGATGCCAACGGAAACCCTCATG 297063 Query 80452 AACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCC 80511 | ||||||||| || | ||| | | ||| || || |||| || ||| || ||| Sbjct 297064 AGCATGTGCTGGGGACGTTCGGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCGCTCC 297123 Query 80512 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTG 80571 | ||| || || ||||| ||||||| || ||||| || ||| |||| || | |||||| Sbjct 297124 AGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAGTCGCGGTCGAAAATGATGGCGGAGTTG 297183 Query 80572 AGTTTATCCTTATATTTGTTAACTACATCCATGGTGATACTT-GAAATAATCGGAGAATG 80630 || || || | | | || | || | || | ||| || || || ||||| | Sbjct 297184 AGGCGGTCTTTGTTCTCCTGGACAATGTCGAGCGT-CTCCTTGGAGATCATGGGAGA--G 297240 Query 80631 TTTCCCATTTTTA--GGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGt 80688 | | | || | || || || |||||| | | |||||||||||||| || || | Sbjct 297241 TGGCGTTTGTTCAAGGGGTTGACGTAGTTGTACAGGTCCTCCATCACTTCGCTGAACACC 297300 Query 80689 ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCT 80748 || || || || ||||| || ||||| ||||| || | ||||| | || ||||| || Sbjct 297301 TTCTTGGTCTCTTTGTGCAGGTTTGAGACGGCGATCCGAGCGGCAAGGATTGCATAGTCG 297360 Query 80749 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 80808 || |||| || || |||||| || || || || ||||| ||||| | || || || Sbjct 297361 GGGTGTTTGGTTGTGAGAGTGGCGGCGATCTCAGCCGCCAGCGTGTCGAGCTCCACGGTG 297420 Query 80809 GTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGA 80868 || || || | || | || || || |||||||| | || | ||||| | | Sbjct 297421 GTGACGCCGCTGTACAAACCCTGAATCACCTTCATCGTAATCTGGGCCGGATCCACAAAG 297480 Query 80869 TCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 80927 |||| ||| | || || || | || || || || ||||||||||| |||||||| Sbjct 297481 TCAGAGTTCAGCCCGTAGCACAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGAC 297539 Score = 93.3 bits (102), Expect = 6e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| ||||| || || |||||| || |||| || || || ||||| | Sbjct 295311 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTCGGCTCCGCGATGTGGATGT 295370 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| || || || || ||||||||||| || | ||| || ||||| || | | |||| Sbjct 295371 TCAGGGACTGGCTCTGGTCGATGAAGGCGCCGCGGTCGGCTGCCATCTTGAGCACGGTCT 295430 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 78953 | || | || ||||| | |||||||| | |||| | ||| ||||| Sbjct 295431 TCTGGGAGATCTCCCACACGGTTTTATACAGCTGCTTCAGATCGTCTGG 295479 >seq2005 Length=666128 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||||| || || || |||||||| ||||| | ||| | Sbjct 130850 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 130791 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| || || || ||||| ||||||||||| || || ||||| |||| Sbjct 130790 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGG 130731 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 130730 CCACCACGCGCTCTCC 130715 >seq714 Length=827726 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || || ||||| || || ||||| || || || ||||||||||| || | ||| | Sbjct 573723 CCTCATCCCTGCTAATCAGCTCATTGGAGAAGGTAAGACCGGGCATTAGCCCTCTCTTCT 573782 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||| | |||| || ||||| || || |||||||| || || ||||| || || | Sbjct 573783 TGAGCCAATAGATGGCAGCGAATGAGCCTGAGAAGAAGATACCCTCCACTGCTGCGAAAG 573842 Query 50102 CAACAAGTCTCTCTCC 50117 | || |||||||| || Sbjct 573843 CCACGAGTCTCTCCCC 573858 >seq1140 Length=734468 Score = 87.8 bits (96), Expect = 3e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| || | ||| || || || ||||| | || || || || |||| ||||| | | Sbjct 322261 CACTGAACACTTTCTTGGTCTCTTTGTGCAAGTTAGACACAGCGATTCGTGCGGCGAGGA 322320 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 || || || ||||||| || || |||||| || | || |||||||||||||||| Sbjct 322321 GTGCGTAGTCGGGATGTTTGGTGGTTAGAGTGGCGGCGGTCTCTGCTGCCAGAGTGTCCA 322380 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 ||||| || || |||||| | || | || ||||| |||||||| Sbjct 322381 GCTCTACTGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 322426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718214804142960