Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq265 477 1e-129 seq1140 96.9 5e-15 seq714 93.3 6e-14 seq2005 87.8 2e-12 >seq265 Length=606166 Score = 477 bits (528), Expect = 1e-129 Identities = 1265/1919 (66%), Gaps = 29/1919 (2%) Strand=Plus/Plus Query 71125 AGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTA 71184 || ||||||||||| || | ||||| |||||||| | ||||| || ||||| || || Sbjct 295651 AGCAGATGAGGATTCACGATCTGAAACTCTCCAGAGAGGACTCTGCGGGTGTAGATGTTG 295710 Query 71185 CTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 71244 ||||| || | ||| | ||||| || || |||| || || || || || || || ||| Sbjct 295711 CTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAGGCCGTGGGC 295770 Query 71245 ATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAG-AGA 71303 || || |||| || || || || || | |||||| ||| || ||||| || || Sbjct 295771 ATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCTTTCAGCAGC 295830 Query 71304 TTCCCAATTCCAA-AGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGT 71362 |||| | ||||| ||||| | || ||||| | Sbjct 295831 TTCC--AGTCCAACAGATCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCT 295888 Query 71363 TACT-AGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAA 71421 | || | || | || ||| | || || ||||| || || | |||| || || || Sbjct 295889 TGCTGACCGGA-GAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGCTCGCAG 295947 Query 71422 CTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCT 71481 |||||||| | || | || || ||||| || || || | | || || || || Sbjct 295948 CTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAATATTTGGATGTTCAGCAGCTGCGCC 296007 Query 71482 TCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCA 71541 || ||||| ||||| || ||| | || || || || || || || |||||||||||| Sbjct 296008 TCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATCCGCCAAACCTTGAACGCCA 296067 Query 71542 ATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTA 71601 || || || || ||||| | ||| || || | || ||||| || | ||||| | ||| Sbjct 296068 ATTCCTATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCGGGCACTGGATAGAAGTTA 296127 Query 71602 ATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCAC--ATCCTTTAGTTTGA 71659 || || || || || || | ||| |||| || |||||| ||| || | |||||| Sbjct 296128 ATCTCGATGATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACGGATGC--TAGTTTTT 296185 Query 71660 GAAAATCAAATCTCC---CATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTAC 71716 ||| ||||| ||| || | || ||| ||| | ||| | || |||||||||| Sbjct 296186 TAAAGTCAAAAGTCCGCTCAGGGGTGACGTACATGTTGAGGGCGATGGAGGCCAGATTAC 296245 Query 71717 AAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACT 71776 | || |||||||| | | || |||| | ||||| ||||| || || || | | Sbjct 296246 AGACCGCTACCTCGTCGTCGCTGGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGCTTT 296305 Query 71777 TGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAA 71836 |||| || || | ||| || || || |||||| ||| || || || || || || || Sbjct 296306 TGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGGCGTCTTTGTACAGCATGT 296365 Query 71837 ACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA 71896 |||| || || ||||| |||| || || ||||| || | ||| || ||||||| | Sbjct 296366 ACGGCGTGCCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCA 296425 Query 71897 TTATATTCTTGTATCTCTTTTCTCTTTCGTAT--TGTGTATATAATCGTTCGAACTCGTC 71954 | | |||| ||| || | || ||| ||||| | || || ||||| || Sbjct 296426 CCACACGCTTGACCCTCCCCTCCTTCTCATATGAAGTGTAGAGCTTC--TCAAACTCCTC 296483 Query 71955 TCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATC 72014 |||||| | ||| | || ||||| ||||| |||||||||| ||||| ||| | Sbjct 296484 ACCCCAACACTCGTCCAGCCCGGGACACTCATTGGGACACATCAGAGACCAGTCTTGGT- 296542 Query 72015 ATCATTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCT 72071 | ||| |||| ||||| || | || || ||||| || || || ||| || ||||| Sbjct 296543 -TGCTTTCCACTCTCTTCATGAACAAGTCGGGGATCCACAGGGCGTAGAAA-AGGTCTCT 296600 Query 72072 GGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGA 72131 || || |||||||| |||||||| ||||| || || || ||||| | | | ||| | Sbjct 296601 GGCCCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCAAA 296660 Query 72132 ATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTAT 72191 |||||||| |||| ||| ||||| | |||| || | |||||| || ||||| || | Sbjct 296661 GTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTGCCGCCCTGGTCGAC 296720 Query 72192 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATT 72251 || | || ||||| || |||||||||| ||| || | | || || || || || Sbjct 296721 ATAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAACCCGTTTGAGTTGCCGTT 296780 Query 72252 GGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCC 72311 || |||| || ||||| || | | | || ||| | | | || ||||| || Sbjct 296781 TGTGCCGGCAATGTAGCTCCCCGTTGATCTGATGCAGCTGACCGCCACGCCGATTCCTCC 296840 Query 72312 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 72371 ||| || ||||| | || || | || | || || |||||||| || || || || Sbjct 296841 AGCCGACTTTGAGATGAGGGCACACTGCTTCAGAGTGTCGTAGATGCCTTCGATGCTGTC 296900 Query 72372 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 72431 ||| ||||| || || || ||||| |||| || | | | || || ||||| || Sbjct 296901 GTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTACCGGCATTGAA 296960 Query 72432 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGC 72491 | ||||| || ||||| || ||||| || || ||||| || ||||| |||||||| || Sbjct 296961 GAGAGTAGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGC 297020 Query 72492 TGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCT 72551 || || || ||| | || || || || | || | ||| | ||| ||||| || | Sbjct 297021 TGCGTCGATGTCCGTTCTGTGGATGCCAACGGAAACCCTCATGAGCATGTGCTGGGGACG 297080 Query 72552 TTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 72611 ||| | | ||| || || |||| || |||||| |||| ||| || || ||||| Sbjct 297081 TTCGGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAA 297140 Query 72612 ATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTT 72671 ||||||| || ||||| || ||| |||| || | || ||||| || || | | Sbjct 297141 GAAGTTGTAGGAGAAGTCGCGGTCGAAAATGATGGCGGAGTTGAGGCGGTCTTTGTTCTC 297200 Query 72672 GTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTA--GG 72728 | || || || | || | ||| || || || ||||| || | | || | || Sbjct 297201 CTGGACAATGTCGAGCGT-CTCCTTGGAGATCATGGGAGA--GTGGCGTTTGTTCAAGGG 297257 Query 72729 ATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTG 72788 || || |||||| | | |||||||||||||| || || | || || || || ||||| Sbjct 297258 GTTGACGTAGTTGTACAGGTCCTCCATCACTTCGCTGAACACCTTCTTGGTCTCTTTGTG 297317 Query 72789 TAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACA 72848 || ||||| ||||| || | ||||| || || ||||| || || |||| || || Sbjct 297318 CAGGTTTGAGACGGCGATCCGAGCGGCAAGGATTGCATAGTCGGGGTGTTTGGTTGTGAG 297377 Query 72849 AGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATAT 72908 |||||| || || || || ||||| ||||| | || || || || || || | || | Sbjct 297378 AGTGGCGGCGATCTCAGCCGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTACAA 297437 Query 72909 TCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATA 72968 || || || |||||||| | || | ||||| | | |||| ||| | || || Sbjct 297438 ACCCTGAATCACCTTCATCGTAATCTGGGCCGGATCCACAAAGTCAGAGTTCAGCCCGTA 297497 Query 72969 ACATAATTTTCTAATACGAGACGTGATTTTATCAAACATAACATTTTCCCGGCATCCAT 73027 || | || || || || ||||||||||| ||||| || ||| ||| ||||| Sbjct 297498 GCACAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGACGCGCTCCTGGCGTCCAT 297556 Score = 93.3 bits (102), Expect = 6e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || ||||| || || |||||| ||| | || || || ||||| || | Sbjct 295311 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTCGGCTCCGCGATGTGGATGT 295370 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| ||||| || || ||||||||||| || | ||| || ||||| || | | |||| Sbjct 295371 TCAGGGACTGGCTCTGGTCGATGAAGGCGCCGCGGTCGGCTGCCATCTTGAGCACGGTCT 295430 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 71036 | || | || ||||| | |||||||| | |||| | ||| ||||| Sbjct 295431 TCTGGGAGATCTCCCACACGGTTTTATACAGCTGCTTCAGATCGTCTGG 295479 >seq1140 Length=734468 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| || || || ||||| | || || || || |||| ||||| || | Sbjct 322261 CACTGAACACTTTCTTGGTCTCTTTGTGCAAGTTAGACACAGCGATTCGTGCGGCGAGGA 322320 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 || || || ||||||| || || |||||| || | ||||||||||||||||||| Sbjct 322321 GTGCGTAGTCGGGATGTTTGGTGGTTAGAGTGGCGGCGGTCTCTGCTGCCAGAGTGTCCA 322380 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 ||||| || || |||||| | || | || ||||| |||||||| Sbjct 322381 GCTCTACTGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 322426 >seq714 Length=827726 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| || ||||| | || ||||| || || || ||||||||||| || | ||| | Sbjct 573723 CCTCATCCCTGCTAATCAGCTCATTGGAGAAGGTAAGACCGGGCATTAGCCCTCTCTTCT 573782 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||| | || | || ||||| || || |||||||| || || ||||| || || | Sbjct 573783 TGAGCCAATAGATGGCAGCGAATGAGCCTGAGAAGAAGATACCCTCCACTGCTGCGAAAG 573842 Query 42207 CAATAAGTCTCTCTCC 42222 | | |||||||| || Sbjct 573843 CCACGAGTCTCTCCCC 573858 >seq2005 Length=666128 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || || | |||||||| || || || |||||||| ||||| | ||| | Sbjct 130850 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 130791 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | || || || ||||| ||||||||||| || || || || |||| Sbjct 130790 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGG 130731 Query 42207 C 42207 | Sbjct 130730 C 130730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671088747110640