Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq265 127 3e-24 seq2005 93.3 6e-14 seq1140 93.3 6e-14 seq714 84.2 3e-11 >seq265 Length=606166 Score = 127 bits (140), Expect = 3e-24 Identities = 347/528 (66%), Gaps = 24/528 (5%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 |||||||||||| | | || |||| || ||||| ||| | ||||| | | |||| Sbjct 296783 ACAAACGGCAACTCAAACGGGTTAGTCCCCATGCTGAGAGTTTACAACAACACGGCACGT 296724 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 || || ||||||||||| ||| | || || || | ||| | ||| |||| || ||| Sbjct 296723 TATGTCGACCAGGGCGGCAACAAAAGACCCGGAGCCTTCGCCATGTACCTGGAGCCGTGG 296664 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||| ||||| |||||||| | ||| || || ||| | || || ||| | Sbjct 296663 CACTTTGACGTGTTTGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGG 296604 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT------C 97040 ||||| ||| | || || || || ||| | || || |||||||||||| | || | Sbjct 296603 GCCAGAGACCTTTTCTACGCCCTGTGGATCCCCGACTTGTTCATGAAGAGAGTGGAAAGC 296544 Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100 ||| | | ||||| || ||||| ||| | || ||||| ||| ||| || Sbjct 296543 AACCAAG------ACTGGTCTCTGATGTGTCCCAATGAGTGTCCCGGGCTGGACGAGTGT 296490 Query 97101 TGGGGCGAAGAGTTTGAGGCCAAG---TACACGGCCTACGAGCAAGAGGGCCGATACGTG 97157 ||||| || ||||||||| ||| ||||| | || ||| | ||||| || || Sbjct 296489 TGGGGTGAGGAGTTTGAG---AAGCTCTACACTTCATATGAGAAGGAGGG--GA-GGGTC 296436 Query 97158 AGACGAGTCG---ATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACT 97214 | || || | | || | | ||||| | ||||| | | | ||| ||| || Sbjct 296435 AAGCGTGTGGTGAAGGCTCAGCAGGTGTGGCACGCCATTATCGAGTCCCAGACAGAAACC 296376 Query 97215 GGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTG 97274 || || |||||||| || ||||| || || || || || |||||||| | | || Sbjct 296375 GGCACGCCGTACATGCTGTACAAAGACGCCTGCAACCGAAAGAGCAACCAGCAGAATCTG 296316 Query 97275 GGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCC 97322 ||||| ||||| || ||| || ||||| ||||| || || ||| || Sbjct 296315 GGCACAATCAAAAGCAGCAACCTCTGCACAGAAATCGTTGAATACACC 296268 >seq2005 Length=666128 Score = 93.3 bits (102), Expect = 6e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 ||||||| ||||||||||| ||||| |||||||| || ||| || || |||||||| | Sbjct 130725 TGGTGGCCTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCT 130784 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 |||| |||||| | || || |||||||| ||||| Sbjct 130785 GGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGAC 130818 >seq1140 Length=734468 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 |||||| | |||||| | | ||||| || || ||||| |||||||| || |||||| Sbjct 320517 CTGTGGTATGCCATCATCGAGTCTCAGACGGAAACGGGAACCCCGTACATGCTTTACAAG 320458 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 ||| || ||| | || |||||||| | || ||||||||||||| | ||| ||| Sbjct 320457 GATGCCTGCAATGGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAATCCAGCAACCTG 320398 Query 97299 TGCACGGAAATTGTAGAGTAC 97319 ||||| || || ||||||||| Sbjct 320397 TGCACAGAGATCGTAGAGTAC 320377 >seq714 Length=827726 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 || ||||| ||||| ||||| || || ||||| |||||||| || || || || ||| Sbjct 573855 GAGAGACTCGTGGCTTTCGCAGCAGTGGAGGGTATCTTCTTCTCAGGCTCATTCGCTGCC 573796 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 |||| ||||||||||||| | || || |||||||| || || Sbjct 573795 ATCTATTGGCTCAAGAAGAGAGGGCTAATGCCCGGTCTTAC 573755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741003490874640