Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1833 149 1e-30 seq714 86.0 1e-11 >seq1833 Length=1844611 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || ||||| Sbjct 459714 ATACCTCCCCTCAGACGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 459655 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | |||||||||||| || |||||||| || || || | ||| || || ||| Sbjct 459654 GAGAGAGTGCGACCGTCTTCTAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGA 459595 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| ||||| || || |||||||| | ||| ||||| || || Sbjct 459594 GGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTTTCAATGGTGTCGCTGGGCTCC 459535 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || || || |||||||| Sbjct 459534 ACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCAT 459485 >seq714 Length=827726 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 268901 GTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAG 268960 ||| ||| ||||||||| ||||| ||| | |||||||| ||| || ||| | |||||| Sbjct 575436 GTACAGAGGTTCTGTCAGGAGGTGCAGGTCCCTGAAGCACGATCCTTCTACAGCTTCCAG 575377 Query 268961 ATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995 || |||||| | | ||||||||||||||||||| Sbjct 575376 ATGCTTATAGAGACTGTTCATTCAGAGATGTACAG 575342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151309679715912