Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq1327 120 2e-22 >seq1327 Length=1883937 Score = 120 bits (132), Expect = 2e-22 Identities = 134/178 (75%), Gaps = 1/178 (1%) Strand=Plus/Plus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || ||||| | || || |||||||| || || || ||||||||||| || || || Sbjct 831687 AGTCCGGTGATGTGTGCGATCATGTAGGTAAGAAGCGCATAGCTGGCGATATTGAAAGGC 831746 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 ||||||| |||||||| || || | |||||| ||||||||||| ||||| | |||| Sbjct 831747 ACCCCGAGGCCCATGTCACCT-GAGCGCTGGTACAGCTGACACGACAGCTCGCCATCGCA 831805 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTA 25668 |||||| |||||||||| || || ||| || || ||||| || | | || |||| || Sbjct 831806 CACGTAGAACTGACACAGGGCGTGGCAGGGGGGCAGAGCCATGAAGGGCAGGTCTGTA 831863 Score = 114 bits (126), Expect = 9e-21 Identities = 130/173 (75%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||||| ||||||||||| || || | ||||||||||| |||||||| ||||| ||||| Sbjct 832532 CATGTTTGTGTACTCTGCCCCAAAGTGTCTCCACTGGAAACCGTACACGGGTCCCAGGTC 832591 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || || || || | | || || || |||| ||||||| || || ||||| || Sbjct 832592 GCCTTCCTCTCTATCCGTGAACCCGAGATTGTCCAGGAAGTCTCGAGACCCGTTGGCTTC 832651 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 25945 ||| ||||| || || ||||| |||||||| |||| ||||| || || |||| Sbjct 832652 CCAAATCTTCACTCCTTTCTCAGAGAGCTCCTTGGCATTTGTTGATCC-CTGA 832703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340112669402022