Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq1747 129 8e-25 seq962 129 8e-25 seq1372 127 3e-24 >seq1747 Length=1312347 Score = 129 bits (142), Expect = 8e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 || ||||| |||||||| |||||||| | |||||||||||| ||| ||| | |||| Sbjct 975449 CCTCCGAATGTGCTGGGCTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCCAATAAGCCT 975508 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 ||||||||| | || ||||||| ||| | ||| | || || ||||||||||| | | Sbjct 975509 TTGAGGGAATAAGGTGCCCCCATCTCCACCATGGTTTCCCCAAAGATGGCGTTTTCTCTG 975568 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCC 8944 || || || ||||| | || | ||| | ||||||||| || |||| |||||| | || Sbjct 975569 GGTTTCTCTACCAAAAGACCTGGGTAGAGCTCCACAGCGTCAATGTGTCCGTACATCTCC 975628 Query 8945 CTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 ||| | || || || || || ||||||| Sbjct 975629 TCGAGCACTGCGGCCATCTCTTTCTCTCCTG 975659 Score = 122 bits (134), Expect = 1e-22 Identities = 172/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 |||||||| |||||||| || || ||||||| ||| || || || | |||| Sbjct 977267 ATGAGTCGTGTGGTCTGGAAGAGCCTTTCGTCATCCCAGTCAGGGTGAACCTCCTTCAAC 977326 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 ||||| ||||| | ||||||||||| |||||||| || || |||||||| ||||| || Sbjct 977327 ACATCACACACCCGGTTGTGTTCCCGCAGCCAGATGGTGGCATACATCATCAGACCGGGG 977386 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||||||| |||||||| ||||| ||||| | || | || || || | ||||| Sbjct 977387 ACCAGGCCGAAAGCCTCGTGACCCACAGCGAAGCGGTGAGAGTCAGGGACATGAGGAGGG 977446 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 ||| ||||| || || || | || | ||||| |||| ||| || || | ||| Sbjct 977447 TAGTGCATGTCAACACCAACTTCCTGTACTGTTGGGGGGTACACTTCTCCATCTACGATC 977506 Query 9862 TG 9863 || Sbjct 977507 TG 977508 >seq962 Length=536132 Score = 129 bits (142), Expect = 8e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 || ||||| |||||||| |||||||| | |||||||||||| ||| ||| | |||| Sbjct 407924 CCTCCGAATGTGCTGGGCTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCCAATAAGCCT 407865 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 ||||||||| | || ||||||| ||| | ||| | || || ||||||||||| | | Sbjct 407864 TTGAGGGAATAAGGTGCCCCCATCTCCACCATGGTTTCCCCAAAGATGGCGTTTTCTCTG 407805 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCC 8944 || || || ||||| | || | ||| | ||||||||| || |||| |||||| | || Sbjct 407804 GGTTTCTCTACCAAAAGACCTGGGTAGAGCTCCACAGCGTCAATGTGTCCGTACATCTCC 407745 Query 8945 CTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 ||| | || || || || || ||||||| Sbjct 407744 TCGAGCACTGCGGCCATCTCTTTCTCTCCTG 407714 Score = 122 bits (134), Expect = 1e-22 Identities = 172/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 |||||||| |||||||| || || ||||||| ||| || || || | |||| Sbjct 406102 ATGAGTCGTGTGGTCTGGAAGAGCCTTTCGTCATCCCAGTCAGGGTGAACCTCCTTCAAC 406043 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 ||||| ||||| | ||||||||||| |||||||| || || |||||||| ||||| || Sbjct 406042 ACATCACACACCCGGTTGTGTTCCCGCAGCCAGATGGTGGCATACATCATCAGACCGGGG 405983 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||||||| |||||||| ||||| ||||| | || | || || || | ||||| Sbjct 405982 ACCAGGCCGAAAGCCTCGTGACCCACAGCGAAGCGGTGAGAGTCAGGGACATGAGGAGGG 405923 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 ||| ||||| || || || | || | ||||| |||| ||| || || | ||| Sbjct 405922 TAGTGCATGTCAACACCAACTTCCTGTACTGTTGGGGGGTACACTTCTCCATCTACGATC 405863 Query 9862 TG 9863 || Sbjct 405862 TG 405861 >seq1372 Length=1073052 Score = 127 bits (140), Expect = 3e-24 Identities = 177/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 ||||||| ||| |||| || || ||| || | ||| | | | |||| ||| | Sbjct 785279 GGACACCACTTGGTGTTGAGGCACACCAGATTCTTCAAAGTGGAATTTTTGATGATACTG 785338 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || || ||||| || ||||||||||| |||||||| | |||||||||||| ||| Sbjct 785339 AAGCCTGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTT 785398 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 ||| |||||||| || || || ||||| |||| ||| | || |||||||| || ||| Sbjct 785399 CCCAACAGGCCTTTCAGAGAGAAGGGAGCACCCATCTCCACCATACTCTCACCAAATATG 785458 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 ||| ||| | || |||| || || || | ||| ||||||| ||| |||||||| Sbjct 785459 CTGTTCCTACGTGTTTTCTCCAGCATGACGCCTGGGTAAAACTCCAAAGCATCGATGTCA 785518 Query 8933 CCGTAAAG 8940 ||||| || Sbjct 785519 CCGTAGAG 785526 Score = 89.7 bits (98), Expect = 7e-13 Identities = 165/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || |||||||||| | ||||| || || ||||| ||| ||| |||||| Sbjct 789491 TCACCAATGATGATGAGTCTGGCAGTCTGGAAGAGCTGTTCATCATCCCAGGTAGGATGT 789550 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 ||| || || | || || ||||||||||| || | ||||| | || |||||||| Sbjct 789551 TCTGCCTTTAGGATGTCACAGACTCTGTTGTGCTCTCGCAGCCAAAGGGTGGCGTACATG 789610 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 ||||||| |||| | |||| | ||| || || | |||||||| | | | || Sbjct 789611 GTGAGACCCGGCAAGATGCCATATATCTCCTGCCCAATGACCAGACGCTTCTCTGGAGGG 789670 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 || | |||||| | ||||||||| |||| || | | ||| || ||||| ||| Sbjct 789671 ACATGTTCAGGATACACCATGTGCACAGGGACCTCAGATATTGTGGGAGGGTACATCTCA 789730 Query 9850 CC 9851 || Sbjct 789731 CC 789732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708471536648160