Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq265 499 4e-136 seq2005 111 2e-19 seq714 105 8e-18 seq1140 87.8 2e-12 >seq265 Length=606166 Score = 499 bits (552), Expect = 4e-136 Identities = 1309/1980 (66%), Gaps = 33/1980 (2%) Strand=Plus/Plus Query 62243 CTGAATGGATCCACCATCTGCC-ATAATCCTATTCTTGATCTCATCATTCCATAATTTTC 62301 |||||||||||| | |||| || | | | ||||| ||||| || |||| | Sbjct 295575 CTGAATGGATCCGTTGT-TGCCGATGAGCTTGTTCTTCATCTCTTCGCTCCACAGCCCCT 295633 Query 62302 TCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTC 62361 ||| || | || | || ||||| ||||| || | ||||| |||||||| | |||| Sbjct 295634 GCTCCGTCAGGTCTTTGAGCAGATGAGGATTCACGATCTGAAACTCTCCAGAGAGGACTC 295693 Query 62362 TCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAG 62421 | || ||||| || || ||||| || | ||| | ||||| || || |||| || || | Sbjct 295694 TGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTG 295753 Query 62422 CAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGA 62481 | || || || || ||||| || |||| || | || || || | || | | | || Sbjct 295754 CGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGA 295813 Query 62482 TTTTATCTTTTAG-AGGTTCCCAATTCCAA-AGATCCGACGGTACAACNNNNNNNNNNNN 62539 | || ||||| || || |||| | ||||| ||||| | || | | Sbjct 295814 TCTTCTCTTTCAGCAGCTTCC--AGTCCAACAGATCGGTGGG--CGTCTTCTCCCACATG 295869 Query 62540 NNNT--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCC 62597 | || || || || || ||| | || ||| | || || ||||| || || | Sbjct 295870 TCGTACTGGAGGATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGC 295929 Query 62598 TTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTC 62657 | | || || || || |||||||| | || |||| || ||||| || || || | Sbjct 295930 TCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAATATTTGG 295989 Query 62658 TTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCC 62717 | || || || || || |||| ||||| || ||| | || || || || ||| Sbjct 295990 ATGTTCAGCAGCTGCGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATCC 296049 Query 62718 GCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCT 62777 || || |||||||| ||||| || || || || || | ||| || || | || ||||| Sbjct 296050 GCCAAACCTTGAACGCCAATTCCTATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCG 296109 Query 62778 GGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACC 62837 || | ||||| | ||||| || || || || || | ||| |||| || |||||| | Sbjct 296110 GGCACTGGATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTTTGACGATGACTTTGGTC 296169 Query 62838 AC--ATCCTTCAGTTTGAGAAAATCAAAT---CGCCCATCTATTACAAACATGTTCAAGG 62892 || || || ||||| ||| ||||| ||| || | || ||||||| | || Sbjct 296170 ACGGATGCT--AGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTACATGTTGAGGG 296227 Query 62893 CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAG 62952 | | || ||||||||||| || |||||||| | | | |||| | || || | Sbjct 296228 CGATGGAGGCCAGATTACAGACCGCTACCTCGTCGTCGCTGGTGTATTCAACGATTTCTG 296287 Query 62953 TGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 63012 |||| || || || | ||||| || || | ||| || || || |||||| ||| || | Sbjct 296288 TGCAGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGG 296347 Query 63013 CATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCC 63072 | || || || || ||| | || || || ||||| |||| || || ||||| || | || Sbjct 296348 CGTCTTTGTACAGCATGTACGGCGTGCCGGTTTCTGTCTGGGACTCGATAATGGCGTGCC 296407 Query 63073 AGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTAT--AGTGTATA 63130 | || ||||||| | | | ||| |||| || | || ||| |||||| | Sbjct 296408 ACACCTGCTGAGCCTTCACCACACGCTTGACCCTCCCCTCCTTCTCATATGAAGTGTAGA 296467 Query 63131 CAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACAT 63190 || || ||||| || |||||| | ||||| || ||||| |||| |||||||| Sbjct 296468 GCTTC--TCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGACACTCATTGGGACACAT 296525 Query 63191 CAACGACCACTCTCCGTCATCCTT--CACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 63248 || ||||| ||| || | ||| ||||| ||||| || | || || ||||| || Sbjct 296526 CAGAGACCAGTCTTGGT--TGCTTTCCACTCTCTTCATGAACAAGTCGGGGATCCACAGG 296583 Query 63249 GC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63307 || || ||| || ||||||| || || ||||| |||||||| ||||| || || || || Sbjct 296584 GCGTAGAAA-AGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAG 296642 Query 63308 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63367 ||| | | | ||| | |||||||| |||| ||| ||||| | |||| || | ||| Sbjct 296643 GAAGTCAAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTT 296702 Query 63368 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63427 ||| || ||||| || | || | || ||||| || |||||||||| ||| || | | Sbjct 296703 GTTGCCGCCCTGGTCGACATAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAA 296762 Query 63428 ACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT 63487 |||||||| | || || || |||| || ||||| || | | | || || | Sbjct 296763 CCCGTTTGAGTTGCCGTTTGTGCCGGCAATGTAGCTCCCCGTTGATCTGATGCAGCTGAC 296822 Query 63488 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATA 63547 | | || ||||| || ||| || ||||| | || || | || | ||||| || Sbjct 296823 CGCCACGCCGATTCCTCCAGCCGACTTTGAGATGAGGGCACACTGCTTCAGAGTGTCGTA 296882 Query 63548 GATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63607 ||| || || ||||| || || ||||| || || || ||||| |||| || | | Sbjct 296883 GATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCT 296942 Query 63608 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63667 | || || ||||| || | ||||| || ||||| || ||||| || || || || || Sbjct 296943 GTTGGTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAG 297002 Query 63668 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63727 ||||| |||||||| |||| ||| || ||| | || || || || | || | ||| Sbjct 297003 GTTGTAGGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGATGCCAACGGAAACCCTCAT 297062 Query 63728 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63787 | ||||||||| || | ||| | | ||| ||| || |||| || |||||| || Sbjct 297063 GAGCATGTGCTGGGGACGTTCGGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCGCTC 297122 Query 63788 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63847 || ||| || || ||||| ||||||| || ||||| || ||| |||| || | ||||| Sbjct 297123 CAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAGTCGCGGTCGAAAATGATGGCGGAGTT 297182 Query 63848 GAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAAT 63906 ||| || || | | | || || || | || | ||| || || || ||||| Sbjct 297183 GAGGCGGTCTTTGTTCTCCTGGACAATGTCGAGCGT-CTCCTTGGAGATCATGGGAGA-- 297239 Query 63907 GTTTCCCATTTTTA--GGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG 63964 || | | || | || || || |||||| | | |||||||||||||| || || | Sbjct 297240 GTGGCGTTTGTTCAAGGGGTTGACGTAGTTGTACAGGTCCTCCATCACTTCGCTGAACAC 297299 Query 63965 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 64024 || || || || ||||| || ||||| ||||| || | ||||| || || ||||| || Sbjct 297300 CTTCTTGGTCTCTTTGTGCAGGTTTGAGACGGCGATCCGAGCGGCAAGGATTGCATAGTC 297359 Query 64025 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 64084 || |||| || || |||||| || || || || ||||| ||||| | || || || Sbjct 297360 GGGGTGTTTGGTTGTGAGAGTGGCGGCGATCTCAGCCGCCAGCGTGTCGAGCTCCACGGT 297419 Query 64085 TGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATG 64144 || || || | || | || ||||| |||||||| | || | ||||| | | Sbjct 297420 GGTGACGCCGCTGTACAAACCCTGAATCACCTTCATCGTAATCTGGGCCGGATCCACAAA 297479 Query 64145 ATCCGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 64204 || | ||| | || || || | || || || || ||||||||||| |||||||| Sbjct 297480 GTCAGAGTTCAGCCCGTAGCACAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGAC 297539 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || ||||| || || |||||| || |||| || || || ||||| | Sbjct 295311 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTCGGCTCCGCGATGTGGATGT 295370 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| || || || || ||||||||||| || | ||| || ||||| || | | |||| Sbjct 295371 TCAGGGACTGGCTCTGGTCGATGAAGGCGCCGCGGTCGGCTGCCATCTTGAGCACGGTCT 295430 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62230 | || | || ||||| | |||||||| | |||| | ||| ||||| Sbjct 295431 TCTGGGAGATCTCCCACACGGTTTTATACAGCTGCTTCAGATCGTCTGG 295479 >seq2005 Length=666128 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| || || || |||||||| || || || |||||||| ||||| | ||| | Sbjct 130850 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 130791 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || |||| |||||| || ||||| ||||||||||| || || || || |||| Sbjct 130790 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAAGG 130731 Query 33446 C 33446 | Sbjct 130730 C 130730 >seq714 Length=827726 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| || || ||||| || || ||||| || || || ||||||||||| || | ||| | Sbjct 573723 CCTCATCCCTGCTAATCAGCTCATTGGAGAAGGTAAGACCGGGCATTAGCCCTCTCTTCT 573782 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | |||||| | |||| ||||||||| || || |||||||| || || ||||| || || | Sbjct 573783 TGAGCCAATAGATGGCAGCGAATGAGCCTGAGAAGAAGATACCCTCCACTGCTGCGAAAG 573842 Query 33446 CAATAAGTCTCTCTCC 33461 | | |||||||| || Sbjct 573843 CCACGAGTCTCTCCCC 573858 >seq1140 Length=734468 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| || | ||| || || || ||||| | || || || || |||| ||||| || | Sbjct 322261 CACTGAACACTTTCTTGGTCTCTTTGTGCAAGTTAGACACAGCGATTCGTGCGGCGAGGA 322320 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 || || || ||||||| || || |||||| || | || |||||||||||||||| Sbjct 322321 GTGCGTAGTCGGGATGTTTGGTGGTTAGAGTGGCGGCGGTCTCTGCTGCCAGAGTGTCCA 322380 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 ||||| || || |||||| | || | || || || |||||||| Sbjct 322381 GCTCTACTGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 322426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622900369944240