Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1833 105 6e-18 >seq1833 Length=1844611 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| ||||| | ||||| || || || |||||||| | |||||| | || | || | Sbjct 459253 CAAGATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACCATCACCTTGGAGGTGGAGCC 459312 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 | ||||||||||||| | ||||| ||||| || || || || || ||||| || Sbjct 459313 CAGCGACACCATCGAGAACGTCAAGGCTAAGATCCAGGATAAGGAGGGCATCCCTCCAGA 459372 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 || || | ||||| | | ||||||||| ||||| |||| | | | || |||||| Sbjct 459373 CCAGCAGCGTCTCATCTTTGCCGGCAAACAGCTCGAGGATGGCCGCACCCTCTCCGACTA 459432 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || || || || ||||||| || || | || |||||||| Sbjct 459433 CAACATCCAGAAGGAGTCCACCCTCCATCTCGTGCTCCGTCTGAGAGGAGG 459483 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | || ||||| | |||||| | || | || | | | Sbjct 459713 ATGCAGATCTTTGTGAAGACCCTGACCGGAAAGACCATCACCCTGGAGGTGGAGCCCAGC 459772 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || ||||| || || || || || ||||| || || Sbjct 459773 GACACCATCGAGAACGTGAAGGCTAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAG 459832 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || || || ||||| || |||| | | | || |||||| ||| Sbjct 459833 CAGCGTCTCATCTTCGCTGGAAAGCAACTTGAGGATGGCCGCACCCTCTCCGACTACAAC 459892 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 || || || || || || ||||||| || || | || ||||||||||| Sbjct 459893 ATCCAGAAGGAGTCCACCCTCCATCTCGTGCTCCGTCTGAGAGGAGGAAA 459942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478626416554080