Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq265 179 1e-39 seq1140 86.0 2e-11 >seq265 Length=606166 Score = 179 bits (198), Expect = 1e-39 Identities = 572/871 (66%), Gaps = 22/871 (3%) Strand=Plus/Minus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 ||||| || ||||| ||| | ||| | ||| | |||| ||||| | |||| | || Sbjct 297083 GAACGTCCCCAGCACATGCTCATGAGGGTTTCCGTTGGCATCCACAGAACGGACATCGAC 297024 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTC-GTGTATTCACGCACGCCACGCCAAC 363566 || || ||||| || || || || || | ||| ||||| |||||| |||| || Sbjct 297023 GCAGCCATTGAGACCTACAACCTGCTGTCGGAGAAGTGG-TTCACCCACGCCTCGCCTAC 296965 Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626 | | |||||| || || | || ||| |||| ||||| || || ||||| Sbjct 296964 TCTCTTCAATGCCGGTACCAACAGGCCTCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAA 296905 Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686 |||||| |||||| || |||| ||||| || ||| | ||||| || || || ||| Sbjct 296904 GGACGACAGCATCGAAGGCATCTACGACACTCTGAAGCAGTGTGCCCTCATCTCAAAGTC 296845 Query 363687 TGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGG 363746 || || ||||| || || || || | | | || | || |||||| ||| Sbjct 296844 GGCTGGAGGAATCGGCGTGGCGGTCAGCTGCATCAGATCAACGGGGAGCTACATTGCCGG 296785 Query 363747 CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAG 363806 |||| || |||| || ||| | || |||||||| | || | |||| || || | Sbjct 296784 CACAAACGGCAACTCAAACGGGTTAGTCCCCATGCTGAGAGTTTACAACAACACGGCACG 296725 Query 363807 GTACGTCGACCAGGGTGG--AGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864 || ||||||||||| || | |||| | || || || || ||||| || ||||| Sbjct 296724 TTATGTCGACCAGGGCGGCAACAAAAGACCC--GGAGCCTTCGCCATGTACCTGGAGCCG 296667 Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTG 363924 || || | ||||| || || ||||| ||| ||||| ||||| ||||| | Sbjct 296666 TGGCACTTTGACGTGTTTGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAG 296607 Query 363925 CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984 | || | || || ||||| || || ||| | | ||| || |||||| | ||||| Sbjct 296606 AGGGCCAGAGACCTTTTCTACGCCCTGTGGATCCCCGACTTGTTCATGAAGAGAGTGGAA 296547 Query 363985 -GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGA-TGTAT 364042 ||| |||| | |||| || | || || | || ||||| || || ||| ||| | Sbjct 296546 AGCAACCAAGACT-GGTCTCTGATGTGTCCCAATGAGTGTCCCGGGCTGGACGAGTGT-T 296489 Query 364043 GGGGTGACGACTATGTT--GCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCT---CG 364097 ||||||| || | || |||||| || | ||||| |||||| | || || Sbjct 296488 GGGGTGAGGAGTTTGAGAAGCTCTACACTTCA--TATGAGAAGGAGGGGAGGGTCAAGCG 296431 Query 364098 TAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGG 364157 | | | || ||| || | ||| ||||| || || || |||| || || || Sbjct 296430 TGTGGTGAAG---GCTCAGCAGGTGTGGCACGCCATTATCGAGTCCCAGACAGAAACCGG 296374 Query 364158 AACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGG 364217 || || || ||| |||||||||| | |||||||| ||| |||||||||| | || || Sbjct 296373 CACGCCGTACATGCTGTACAAAGACGCCTGCAACCGAAAGAGCAACCAGCAGAATCTGGG 296314 Query 364218 TACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGA 364276 ||||| || || |||||||| || || || || ||||||||||| ||||||| Sbjct 296313 CACAAT-CAAAAGCAGCAACCTCTGCACAGAAATCGTTGAATACACCAGCGACGACGAGG 296255 Query 364277 CTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 || || ||||| || || || ||||| || Sbjct 296254 TAGCGGTCTGTAATCTGGCCTCCATCGCCCT 296224 Score = 87.8 bits (96), Expect = 5e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 364952 AGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTT 365011 || ||||| |||| | ||||| |||||||||| | || |||||||| ||||| || | Sbjct 295496 AGGACATTGAAGGAATCCCAGACGATCTGAAGCAGCTGTATAAAACCGTGTGGGAGATCT 295437 Query 365012 CCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGT 365071 || | || | | | ||||| ||||| ||||| || || ||| |||||||||| Sbjct 295436 CCCAGAAGACCGTGCTCAAGATGGCAGCCGACCGCGGCGCCTTCATCGACCAGAGCCAGT 295377 Query 365072 CGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACG 365131 | | ||| | ||| | |||| | || || ||| || || |||||| ||||||| Sbjct 295376 CCCTGAACATCCACATCGCGGAGCCGAACTACGGCAAACTGACCAGCATGCACTTCTACG 295317 Query 365132 GGTGGAAA 365139 | |||||| Sbjct 295316 GCTGGAAA 295309 Score = 84.2 bits (92), Expect = 6e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || || ||||||||||| || || ||||||||||| || |||||||||| ||||| | Sbjct 295778 GCCCCGATGCCCACGGCCTCCACCGCACAGATCCTGGGCAACAACGAGTCTATCGAAGCC 295719 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | || ||||| | || | ||| | || || || ||||| |||| | | || ||| Sbjct 295718 TACACCAGCAACATCTACACCCGCAGAGTCCTCTCTGGAGAGTTTCAGATCGTGAATCCT 295659 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATC 364929 | || |||| || || | || | ||||||||| | || ||||||||| | || Sbjct 295658 CATCTGCTCAAAGACCTGACGGAGCAGGGGCTGTGGAGCGAAGAGATGAAGAACAAGCTC 295599 Query 364930 ATCG 364933 |||| Sbjct 295598 ATCG 295595 >seq1140 Length=734468 Score = 86.0 bits (94), Expect = 2e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || ||||||||||| ||||| |||||||||||||| || |||||||||| | | || || Sbjct 319539 GCCCCCATGCCCACAGCTTCCACTGCACAGATCCTGGGCAACAACGAGTCCATTGAGCCC 319480 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGT 364859 | || ||||| | || | ||| |||| || || ||||| |||| ||| Sbjct 319479 TACACCAGCAACATCTACACCCGCAGGGTGCTCTCAGGAGAGTTTCAGGT 319430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303253170902948