Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1833 105 6e-18 >seq1833 Length=1844611 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | ||||| || || || |||||||| | || ||| | || || ||| | Sbjct 459253 CAAGATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACCATCACCTTGGAGGTGGAGCC 459312 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || ||||||||||||| | ||||| ||||| || || || ||||| ||||| || Sbjct 459313 CAGCGACACCATCGAGAACGTCAAGGCTAAGATCCAGGATAAGGAGGGCATCCCTCCAGA 459372 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||| | || || | | |||||| || ||||| |||| | | | | || ||| || Sbjct 459373 CCAGCAGCGTCTCATCTTTGCCGGCAAACAGCTCGAGGATGGCCGCACCCTCTCCGACTA 459432 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || || || || | ||| | ||| | | |||||||||| Sbjct 459433 CAACATCCAGAAGGAGTCCACCCTCCATCTCGTGCTCCGTCTGAGAGGAGG 459483 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || ||||| | || ||| | || || ||| ||| | Sbjct 459713 ATGCAGATCTTTGTGAAGACCCTGACCGGAAAGACCATCACCCTGGAGGTGGAGCCCAGC 459772 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| || || || ||||| ||||| || || Sbjct 459773 GACACCATCGAGAACGTGAAGGCTAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAG 459832 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || || |||||||| || |||| | | | | || ||| || ||| Sbjct 459833 CAGCGTCTCATCTTCGCTGGAAAGCAACTTGAGGATGGCCGCACCCTCTCCGACTACAAC 459892 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || || || || || | ||| | ||| | | ||||||||||| Sbjct 459893 ATCCAGAAGGAGTCCACCCTCCATCTCGTGCTCCGTCTGAGAGGAGGA 459940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429904487572170