Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq265 241 1e-58 seq1833 122 8e-23 seq1140 95.1 1e-14 >seq265 Length=606166 Score = 241 bits (266), Expect = 1e-58 Identities = 972/1511 (64%), Gaps = 44/1511 (3%) Strand=Plus/Plus Query 145056 GATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGG 145115 |||| |||| ||||||||| || | | || | || || | ||| ||| ||| Sbjct 295661 GATTCACGATCTGAAACTCTCCAGAGAGGACTCTGCGGGTGTAGATGTTGCTGGTGTAGG 295720 Query 145116 GTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCA 145175 ||| | ||||||||| ||||||||||| || ||||| | || |||||||| |||| Sbjct 295721 CTTCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAGGCCGTGGGCATCGGGGCCA 295780 Query 145176 CCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCC 145235 || | || | || ||| || || ||| | || || ||| ||| ||| Sbjct 295781 GCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCTTTCAGCAGCTTCCAGTCCA 295840 Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGC 145295 | || || ||| || ||||||||||||||||| | ||||||| |||| | || Sbjct 295841 ACAGATCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACCGGAG 295900 Query 145296 TGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG--GCGAGCTCGCAACTCGCCTCCAG 145353 ||||| | | ||| ||| || | | || |||||||| ||||||||||| Sbjct 295901 AGCCTTCGTACGTCTCGTAGGGGCCG--AGCTCAGCGGCCAGCTCGCAGCTCGCCTCCAG 295958 Query 145354 AGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTC 145413 ||| || | || || ||||| ||||| |||| |||||| ||| || ||| || Sbjct 295959 GGCGGCGTAGTAGATGGTCTCAAATATTTGGATGTTCAGCAGCTGCGCCTCGGGGCTTTC 296018 Query 145414 GTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGG 145473 |||| |||| ||| | || ||||| || | || || | || | || || || Sbjct 296019 AAACGGGTAACGCATCAGGATGAAGGCATCCGCCAAACCTTGAACGCCAATTCCTATCGG 296078 Query 145474 CCGATGTTTCATGTTGCTCATCCTCGC--CG---ACTCGATAGGATATCGATTACGGTCG 145528 || || | ||||| | || ||| || ||| ||||| | ||| ||| Sbjct 296079 CCTGTGGCGCTTGTTGGACTTCTCCGCTTCGGGCACTGGATAGAAG-----TTAATCTCG 296133 Query 145529 ATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTC-AAAGTC 145587 || || || ||||||||| || | || || || | | | || | |||| |||||| Sbjct 296134 ATGATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACG-GATGCTAGTTTTTTAAAGTC 296192 Query 145588 AAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAAC 145647 ||| || | ||| | || | | |||| |||||| || |||| |||||| || Sbjct 296193 AAA---AGTCCGCTCAGGGGTGACGTACATGTTGAGGGCGATGGAGGCCAGATTACAGAC 296249 Query 145648 TGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGAT 145707 || ||| ||| || | |||||| ||||| || | ||| | ||||| | |||||| Sbjct 296250 CGCTACCTCGTCGTCGCTGGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGCTTTTGAT 296309 Query 145708 GGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 || |||||||| ||||| || || || | |||||| ||||| ||||| ||||||||||| Sbjct 296310 TGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGGCGTCTTTGTACAGCATGTACGG 296369 Query 145768 TCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGC---GCACGCAC 145824 ||| || || ||| | || |||||| |||| | ||||| || ||| Sbjct 296370 CGTGCCGGTTTCTGTCTGGGACT---CGATAATGGCGTGCCACACCTGCTGAGCCTTCAC 296426 Query 145825 CTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACC 145884 | ||| | | ||||| | || ||| ||||||||| ||||||| | ||| Sbjct 296427 CACACGCTTGACCCTCCCCTCCTTCTCATATGAAGTGTAGAGCTTCTCAAACTCCTCACC 296486 Query 145885 GTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGC 145944 | || ||| ||| |||||||||| |||||||||||||| ||||| | |||| Sbjct 296487 CCAACACTCGTCCAGCCCGGGACACTCATTGGGACACATCAGAGACCAGTCTTGGTTGCT 296546 Query 145945 GTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCGCT 146002 | || | || ||| ||||| || || | |||||| ||||| | | ||| | || || Sbjct 296547 TTCCACTCTCTTCATGAACAAGTCGGGGATCCACAGGGCGTAGAAAAGGTCTCTGGCCCT 296606 Query 146003 TTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGC 146062 ||| ||||| || |||| ||||| | || | | | | ||| |||| Sbjct 296607 CTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGC 296664 Query 146063 CACGGTTCAATATAGACGGCGAGGGCTCC---TTTTCGTTTGCCACCCTGGTCCACGTGA 146119 ||||| || | || | ||||| |||||| | || ||||| |||||||| || | | Sbjct 296665 CACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTGCCGCCCTGGTCGACATAA 296724 Query 146120 CGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTA 146179 ||| || ||||||| | || | || |||||| | | ||| | | |||||| || Sbjct 296725 CGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAACCCGTTTGAGTTGCCGTTTGTG 296784 Query 146180 GAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC-GCC 146238 | || | | || || | | ||| || |||||||| || || ||| Sbjct 296785 CCGGCAATGTAGCTCCCCGTTGATCTGATGCAGCTGACCGCCACGCCGATTCCTCCAGCC 296844 Query 146239 GTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG-- 146296 | |||| || || ||| || | || || ||||||||||| || ||||| ||| Sbjct 296845 G-ACTTTGAGATGAGGGCACACTGCTTCAGAGTGTCGTAGATGCCTTCGATGCTGTCGTC 296903 Query 146297 CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAAC 146356 |||| ||| ||||||| ||||| | ||| ||| | | | || || || ||| Sbjct 296904 CTTC--ATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTACCGGCATTGAAG 296961 Query 146357 AACGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGC 146415 | || || ||||| || || || || || | || || || || || || || Sbjct 296962 AGAGTAGGCGAGGCGTGGGTGAACCACTTCTCCG-ACAGCAGGTTGTAGGTCTCAATGGC 297020 Query 146416 GTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCG 146475 | | ||||| | || ||||| | | || | |||||||||||| ||||| || Sbjct 297021 TGCGTCGATGTCCGTTCTGTGGATGCCAACGGAAACCCTCATGAGCATGTGCTGGGGACG 297080 Query 146476 CTCCGCCACTTGATTGTCAATCTTTAACAAATAG--CCGTTCTCCAGGGTTTTGTATCCG 146533 || ||||||| || ||||| | || ||| ||| |||||| || ||| | || Sbjct 297081 TTCGGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCG--CTCCAGAGTCTTGAAGCCA 297138 Query 146534 AAAAATTTGTA 146544 || || ||||| Sbjct 297139 AAGAAGTTGTA 297149 >seq1833 Length=1844611 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || ||| ||||| | || | ||| |||||||| || |||||||| ||| Sbjct 459711 CCTCCCCTCAGACGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 459652 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| ||||||||||| || ||| |||| | |||||||||||| |||||| Sbjct 459651 AGAGTGCGACCGTCTTCTAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGG 459592 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || ||| ||| ||| | Sbjct 459591 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTTTCAATGGTGTCGCTGGGCTCCACC 459532 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || ||||| |||||||| Sbjct 459531 TCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCAT 459485 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || ||| ||||| | ||| | ||| |||||||| || |||||||| ||| Sbjct 459939 CCTCCTCTCAGACGGAGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 459880 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| || ||||| || ||| |||| | |||||||||||| |||||| Sbjct 459879 AGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGG 459820 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||| || ||| | | ||| | || ||| ||| ||| | Sbjct 459819 ATGCCCTCCTTATCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACC 459760 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || || || |||||||| Sbjct 459759 TCCAGGGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 459713 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || ||| ||||| | ||| | ||| |||||||| || |||||||| ||| Sbjct 459483 CCTCCTCTCAGACGGAGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 459424 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||| ||||| || |||| | |||||||||||| |||||| Sbjct 459423 AGGGTGCGGCCATCCTCGAGCTGTTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGAGGG 459364 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||| || ||||| | ||| | || ||| ||| ||| | Sbjct 459363 ATGCCCTCCTTATCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 459304 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | || || || || |||||||| Sbjct 459303 TCCAAGGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 459257 >seq1140 Length=734468 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | ||||||||| | ||||| ||||| |||||||||| ||||| || ||||| | Sbjct 320376 TGTACTCTACGATCTCTGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTCTGCTGGT 320435 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 | || |||| ||||| || |||||||| ||||||||||| Sbjct 320436 TGCTCTTCCCATTGCAGGCATCCTTGTAAAGCATGTACGG 320475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471977316437760