Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1833 123 2e-23 seq1532 100 2e-16 >seq1833 Length=1844611 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || | || || | ||| || ||||||||||| || ||||||||||||| Sbjct 459939 CCTCCTCTCAGACGGAGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 459880 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | ||| || || || | || || ||||| ||||| ||| Sbjct 459879 AGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGG 459820 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| || || || || || |||||| | | | ||||||| ||||||| Sbjct 459819 ATGCCCTCCTTATCCTGGATCTTAGC--CTTCACGTTCTCGATGGTGTCGCTGGGCTCCA 459762 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| ||||||||||| || || ||||| |||||||| Sbjct 459761 CCTCCAGGGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 459713 Score = 122 bits (134), Expect = 7e-23 Identities = 168/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || | || || | ||| || ||||||||||| || ||||||||||||| Sbjct 459483 CCTCCTCTCAGACGGAGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 459424 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | |||||||| ||| | || || ||||| ||||| ||| Sbjct 459423 AGGGTGCGGCCATCCTCGAGCTGTTTGCCGGCAAAGATGAGACGCTGCTGGTCTGGAGGG 459364 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| || || || || || ||| || | | | ||||||| ||||||| Sbjct 459363 ATGCCCTCCTTATCCTGGATCTTAGC--CTTGACGTTCTCGATGGTGTCGCTGGGCTCCA 459306 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| ||||||||| ||||| |||| || || ||||| |||||||| ||| Sbjct 459305 CCTCCAAGGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCATCTTG 459253 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || ||||||||||||| | || |||| || | || Sbjct 459687 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCTTCTAGCTGC 459628 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || | || || ||||| ||||| ||| | |||||| ||||| || || Sbjct 459627 TTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGGATCTTA 459568 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | ||||||| ||||||| |||| ||||||||| ||||| | Sbjct 459567 GC--CTTGACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAG 459510 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || || || |||||||| Sbjct 459509 TCAGGGTCTTCACGAAGATCTGCAT 459485 >seq1532 Length=669350 Score = 100 bits (110), Expect = 2e-16 Identities = 164/232 (71%), Gaps = 7/232 (3%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | ||| || ||||||||||| || ||||||||||||| | ||| | | || Sbjct 291610 CAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 291669 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 || | |||||||| ||| | || |||| ||| ||||| || | ||| || || || Sbjct 291670 TTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATC 291729 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | ||||||| |||||| || | ||||||| Sbjct 291730 CTGGATCTTAGC--CTTGACGTTCTCAATGGTGTCGCTGGGCTCGACCTCAAGGGTGATG 291787 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT-TTTGTAGCCTTATTAA 16951 || || ||||| || || |||||||| |||||||| |||| | | |||||| Sbjct 291788 GTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGTTTGCA--CCTATTAA 291837 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | ||| || ||||||||||| || || |||||||||| | ||| | | || Sbjct 291382 CAGGACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGAGAGGGTGCGGCCATC 291441 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 || | |||||||| ||| | || |||| ||| ||||| || | ||| || ||||| Sbjct 291442 TTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTC 291501 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || ||| ||||| | | | ||||||| |||||| |||| ||||||| Sbjct 291502 CTGGATTTTAGCT--TTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATG 291559 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || || || || ||||| || |||||||| Sbjct 291560 GTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 291594 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || ||||||||||||| | ||| | | || || | ||| Sbjct 291164 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGT 291223 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| | || |||| ||| | ||| || | ||| || ||||| || || Sbjct 291224 TTGCCGGCAAAGATCAGCCTCTGCTTGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTA 291283 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | ||||||| |||||| |||| ||||||||| || |||| Sbjct 291284 GC--CTTGACGTTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGCCGG 291341 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || |||||||| Sbjct 291342 TGAGGGTCTTGACGAAGATCTGCAT 291366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405058308821860