Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1833 107 2e-18 seq1532 104 2e-17 >seq1833 Length=1844611 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || ||||||| | || |||||| | Sbjct 459257 ATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACCATCACCTTGGAGGTGGAGCCCAGC 459316 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| || || || || || || || ||||| Sbjct 459317 GACACCATCGAGAACGTCAAGGCTAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAG 459376 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || |||||||||||||| | || |||| ||||| | ||| ||||| Sbjct 459377 CAGCGTCTCATCTTTGCCGGCAAACAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 459436 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || ||| | ||||| | || |||||||| Sbjct 459437 ATCCAGAAGGAGTCCACCCTCCATCTCGTGCTCCGTCTGAGAGGAGG 459483 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||||| || ||||||| | || |||||| | Sbjct 459713 ATGCAGATCTTTGTGAAGACCCTGACCGGAAAGACCATCACCCTGGAGGTGGAGCCCAGC 459772 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| || || || || || || || ||||| Sbjct 459773 GACACCATCGAGAACGTGAAGGCTAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAG 459832 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || || || ||| | || |||| ||||| | ||| ||||| Sbjct 459833 CAGCGTCTCATCTTCGCTGGAAAGCAACTTGAGGATGGCCGCACCCTCTCCGACTACAAC 459892 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 || || || || ||||| || ||| | ||||| | || ||||||||||| || Sbjct 459893 ATCCAGAAGGAGTCCACCCTCCATCTCGTGCTCCGTCTGAGAGGAGGAAACTA 459945 >seq1532 Length=669350 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || || ||| | Sbjct 291594 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 291535 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| |||| |||||| ||||| ||||| ||||| |||||||| Sbjct 291534 GACACCATTGAGAACGTGAAAGCTAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 291475 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||||||||| | ||||||| ||||| | ||| |||||| Sbjct 291474 CAGAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAT 291415 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || ||| | || || Sbjct 291414 ATCCAGAAGGAGTCCACCCTTCATCTTGTCCT 291383 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | ||||| || ||||||| | || || ||| | Sbjct 291822 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 291763 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| || || ||||| ||||| |||||||| Sbjct 291762 GACACCATTGAGAACGTCAAGGCTAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 291703 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||||||||| | ||||||| ||||| | ||| ||||| Sbjct 291702 CAGAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 291643 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || ||| | || || Sbjct 291642 ATCCAGAAGGAGTCCACCCTTCATCTTGTCCT 291611 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || ||||||| | || || ||| | Sbjct 291366 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTCGAGCCCAGC 291307 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| ||||| ||||| |||||| | Sbjct 291306 GACACCATTGAGAACGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCTGACAAG 291247 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||||||||| | ||||||| ||||| | ||| ||||| Sbjct 291246 CAGAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 291187 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 291186 ATCCAGAAGGAGTCCACCCTCCA 291164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433296238953410