Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1833 132 4e-26 seq1532 122 7e-23 seq265 96.9 3e-15 >seq1833 Length=1844611 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || ||||| || || || || || || || |||| | || ||||| || Sbjct 459254 AAGATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACCATCACCTTGGAGGTGGAGCCC 459313 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| ||| | || | |||| || || || || |||||||| || || || || Sbjct 459314 AGCGACACCATCGAGAACGTCAAGGCTAAGATCCAGGATAAGGAGGGCATCCCTCCAGAC 459373 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || ||||||||||||||| | |||||| ||||||| ||||||| ||| Sbjct 459374 CAGCAGCGTCTCATCTTTGCCGGCAAACAGCTCGAGGATGGCCGCACCCTCTCCGACTAC 459433 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || |||||| | ||| | || | || || | |||||| Sbjct 459434 AACATCCAGAAGGAGTCCACCCTCCATCTCGTGCTCCGTCTGAGAGGAGGT 459484 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| ||| | Sbjct 459485 ATGCAGATCTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTGGAGCCCAGC 459544 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || ||||||||||| || || || || || Sbjct 459545 GACACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCAG 459604 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| |||| || ||||| ||||||| |||||| Sbjct 459605 CAGCGTCTCATCTTCGCTGGAAAGCAGCTAGAAGACGGTCGCACTCTCTCCGACTACAAC 459664 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 459665 ATCCAGAAGGAGTCCACC 459682 >seq1532 Length=669350 Score = 122 bits (134), Expect = 7e-23 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 || ||| ||||| || ||||| || || | ||||| || || |||| ||||| || || Sbjct 291829 TGCAAACATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGA 291770 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 ||| ||| ||| | || | |||| || || || || ||||| || ||||| || Sbjct 291769 GCCCAGCGACACCATTGAGAACGTCAAGGCTAAGATCCAGGATAAGGAAGGCATTCCCCC 291710 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 || || || | || || ||||||||||||||| | || ||| ||||||| ||||||| Sbjct 291709 TGACCAGCAGAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGA 291650 Query 22392 TTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || || |||||| | ||| | || |||| || | || ||| Sbjct 291649 CTACAACATCCAGAAGGAGTCCACCCTTCATCTTGTCCTGCGTCTGAGGGGCGGT 291595 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || || || ||| | Sbjct 291594 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 291535 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | ||| ||||| || |||||||| || ||||| || || || Sbjct 291534 GACACCATTGAGAACGTGAAAGCTAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 291475 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||||||| | || ||| ||||||| ||||||| ||||| Sbjct 291474 CAGAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAT 291415 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || |||||| | ||| | || |||| || | || ||| Sbjct 291414 ATCCAGAAGGAGTCCACCCTTCATCTTGTCCTGCGTCTGAGGGGCGGT 291367 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || ||| | Sbjct 291366 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTCGAGCCCAGC 291307 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || |||||||| || ||||| || || | Sbjct 291306 GACACCATTGAGAACGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCTGACAAG 291247 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||||||| | || ||| ||||||| ||||||| |||||| Sbjct 291246 CAGAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 291187 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 291186 ATCCAGAAGGAGTCCACC 291169 >seq265 Length=606166 Score = 96.9 bits (106), Expect = 3e-15 Identities = 555/876 (63%), Gaps = 20/876 (2%) Strand=Plus/Plus Query 129400 GCCAATTCGCAACTCGCTTCCAATGCGCCAAAATAAATTGTTTCGGCAATTTTGGTGTTC 129459 |||| ||||| ||||| |||| ||| | | || || || || |||| | ||||| Sbjct 295936 GCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAATATTTGGATGTTC 295995 Query 129460 AACACTTTGGCCTGGTCGCTTTCGTACGGCATACGCAACATGGCAAATGTGTCGGCCAAA 129519 | || | |||| | |||||| |||| ||||| || | || | || |||||| Sbjct 295996 AGCAGCTGCGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATCCGCCAAA 296055 Query 129520 CCTTGAATACCCACACCGATGGGTCGATGTTTTCTATTGGATTTTTGTGCCGACAACAAG 129579 ||||||| || | || || || | || | ||||| || | || || Sbjct 296056 CCTTGAACGCCAATTCCTATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCGGGCACT 296115 Query 129580 GGATAGTAGTTGATGTCTATAATTTTGTTTAAATTCTTGACCACAATTTTCGTTACGTAT 129639 |||||| |||| || || || || ||||| || || ||||| | | ||| || ||| || Sbjct 296116 GGATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACGGAT 296175 Query 129640 TTTAACATTTCAAAATTGTAC-TCGCCTACATCGATGTCG-ACAAATTGATTGACACAAA 129697 || ||| ||| | | || || || | || || ||| |||| | | Sbjct 296176 GCTAGTTTTTTAAAGTCAAAAGTCCGCT-CAGGGGTGACGTACATGTTGAGGGCGA---- 296230 Query 129698 TCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGC 129757 | ||||||| ||| ||||| || |||| | | |||| || || ||||| | || Sbjct 296231 TGGAGGCCAGATTACAGACCGCTACCTCGTCGTCGCTGGTGTATTCAACGATTTCTGTGC 296290 Query 129758 ACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCAT 129817 | | || || |||| || ||||||| || || || || || || |||||| || | Sbjct 296291 AGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGGCGT 296350 Query 129818 CTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCTG-AAC 129876 ||||||||| ||||||||||||||| ||||| || | |||| ||||| | || || Sbjct 296351 CTTTGTACAGCATGTACGGCGTGCCGGTTTCTGTCTGGGACTCGATAATGG-CGTGCCAC 296409 Query 129877 AAGTCTCGAGCCTTGATCTGTCTTACAAATTTGCCACATTTCTCGTATGCCACATACAGT 129936 | | ||||||| | | | | | || ||||| |||| || || Sbjct 296410 ACCTGCTGAGCCTTCACCACACGCTTGACCCTCCCCTCCTTCTCATATGAAGTGTAGAGC 296469 Query 129937 TGTTCAAA-TTCTGAGCCGTGTACGGTGTCGAGCAACGGCGATTCACGCGGACACATCAA 129995 | ||||| | || | || || ||| ||| || | ||| |||||||||| Sbjct 296470 TTCTCAAACTCCTCACCCCAACAC-TCGTCCAGCCCGGGACACTCATTGGGACACATCAG 296528 Query 129996 ACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTA 130055 | ||| | | ||| |||| ||||| ||||| ||||| | |||||||||||| Sbjct 296529 AGACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAACAAGTCGGGGATCCACAGGGCGTA 296588 Query 130056 CAACAAATCTC--GCGCTTTTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAA 130113 || | |||| || || | | ||||| || |||| ||||| || ||||| Sbjct 296589 GAAAAGGTCTCTGGCCCTCTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAG 296646 Query 130114 TCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCC----CTTCCGTTT 130169 || | | ||| ||||||||| || | || || || | || || ||| | || Sbjct 296647 TCAAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTG-TT 296705 Query 130170 GCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCC 130229 ||| || ||||| || | || | | |||||||| |||| || ||| | | || || Sbjct 296706 GCCGCCCTGGTCGACATAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAACCC 296765 Query 130230 GTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCC 130265 ||| | |||||||||||| ||||| | || || Sbjct 296766 GTTTGAGTTGCCGTTTGTGCCGGCAATGTAGCTCCC 296801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419697235773910