Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1532 185 2e-41 seq1833 165 2e-35 seq2005 93.3 8e-14 seq1101 84.2 4e-11 >seq1532 Length=669350 Score = 185 bits (204), Expect = 2e-41 Identities = 174/219 (79%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || |||||||| || |||||||| || |||||||| || | Sbjct 291149 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 291208 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| || ||||| || || || || || | ||| || |||||||||||| Sbjct 291209 CCATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTTGTCAGGGGGAATGCCTTCC 291268 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 ||||| || ||||| ||||||||| ||| |||||||| ||| | || || |||| ||| Sbjct 291269 TTGTCCTGGATCTTAGCCTTGACGTTCTCAATGGTGTC-GCTGGGCTCGACCTCCAGGGT 291327 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || ||||||||||||||||| |||||||| Sbjct 291328 GATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 291366 Score = 172 bits (190), Expect = 1e-37 Identities = 166/209 (79%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || |||||||| || |||||||| || |||||||| || | |||||||| | Sbjct 291615 CAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAA 291674 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||| || ||||| || || || || || ||||| || |||||||||||||| || || | Sbjct 291675 GCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGA 291734 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTT 68432 |||| ||||||||| ||| |||||||| ||| | || || || | ||||||||| || Sbjct 291735 TCTTAGCCTTGACGTTCTCAATGGTGTC-GCTGGGCTCGACCTCAAGGGTGATGGTCTTG 291793 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||||||||| || |||||||| Sbjct 291794 CCGGTGAGGGTCTTGACAAAGATCTGCAT 291822 Score = 163 bits (180), Expect = 5e-35 Identities = 164/209 (78%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || |||||||| || ||||| || || |||||||| || | |||||||| | Sbjct 291387 CAAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGAGAGGGTGCGGCCATCTTCAA 291446 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||| || ||||| || || || || || ||||| || ||||||||||||||||| || | Sbjct 291447 GCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGA 291506 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTT 68432 | || || || ||| ||| |||||||| ||| | || || |||| ||||||||| || Sbjct 291507 TTTTAGCTTTCACGTTCTCAATGGTGTC-GCTGGGCTCAACCTCCAGGGTGATGGTCTTG 291565 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||||||||| |||||||| Sbjct 291566 CCAGTAAGGGTCTTGACGAAGATCTGCAT 291594 >seq1833 Length=1844611 Score = 165 bits (182), Expect = 2e-35 Identities = 179/235 (76%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 ||| |||||||| | || || | || | || || |||||||| || |||||||| || Sbjct 459946 TTAGTTTCCTCCTCTCAGACGGAGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTA 459887 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 |||||||| || | ||||| || | ||||| || ||||| ||||| | || ||||| Sbjct 459886 GTCGGAGAGGGTGCGGCCATCCTCAAGTTGCTTTCCAGCGAAGATGAGACGCTGCTGGTC 459827 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-G 68406 || || ||||| ||||| || || ||||| ||||| ||| |||||||||||| ||| | Sbjct 459826 TGGAGGGATGCCCTCCTTATCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTC-GCTGG 459768 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||| ||||||||| ||||| || |||||||| || || |||||||| Sbjct 459767 GCTCCACCTCCAGGGTGATGGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 459713 Score = 163 bits (180), Expect = 5e-35 Identities = 160/204 (78%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || |||||||| || |||||||| || |||||||| || | ||||| || | ||| Sbjct 459459 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGT 459400 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || ||||| || ||||| | || ||||| || || ||||| ||||| || || ||||| Sbjct 459399 TTGCCGGCAAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTA 459340 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 ||||||||| |||||||||||| |||| || || |||||||||||||| ||||| || Sbjct 459339 GCCTTGACGTTCTCGATGGTGTC-GCTGGGCTCCACCTCCAAGGTGATGGTCTTTCCAGT 459281 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 | |||||| || || |||||||| Sbjct 459280 CAAGGTCTTCACAAAGATCTGCAT 459257 >seq2005 Length=666128 Score = 93.3 bits (102), Expect = 8e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||||||| | |||||||||| ||||| |||||||||||||| ||| ||||| Sbjct 132678 CATGACGCCCATCCTCTGGTACTCTCCGACCCGCTTCTCGAAGAAGTTGGTCTTTCCCTC 132619 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 || |||||| |||||||||||| || |||||||| Sbjct 132618 CAGAGAAATGTTCTCCATGAAGTCGAACGGGTTCTC 132583 >seq1101 Length=856499 Score = 84.2 bits (92), Expect = 4e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTC 68416 ||||||||||| || |||||||||||||| ||||| ||||| ||| | || || || Sbjct 122684 CCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCGATAGTGTC-GCTGGGCTCAACCTC 122626 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || ||||| | ||||| ||||| |||||||| Sbjct 122625 AAGGGTGATGGTCTTCCCCGTCAATGTCTTCACGAAGATCTGCAT 122581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921553117036080