Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1833 113 4e-20 seq1532 105 6e-18 >seq1833 Length=1844611 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | ||| ||| ||||| || || || ||| Sbjct 459681 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCTTCTAGCTGCTTTCCA 459622 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||| ||||| ||||| || ||||| ||||| || Sbjct 459621 GCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTG 459562 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| ||||||| ||| || || |||| ||| | || || || ||||| || Sbjct 459561 ACATTTTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTC 459502 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 459501 TTCACGAAGATCTGCAT 459485 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | || || ||| |||||||| || ||| Sbjct 459909 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGTTGCTTTCCA 459850 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||| ||||| ||||| || || || ||||| || Sbjct 459849 GCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTAGCCTTC 459790 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||||| ||| || || |||| ||| | || || |||||||| || Sbjct 459789 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTTCCGGTCAGGGTC 459730 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 459729 TTCACAAAGATCTGCAT 459713 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | || || ||| || || ||||| || Sbjct 459453 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGTTTGCCG 459394 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||||||||| ||||| ||||| ||||| || || || ||||| || Sbjct 459393 GCAAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTAGCCTTG 459334 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||||| ||| || || |||| ||| | || || || |||| || Sbjct 459333 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTTCCAGTCAAGGTC 459274 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 459273 TTCACAAAGATCTGCAT 459257 >seq1532 Length=669350 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 |||||||| | || | || || | ||| | || || || || || |||||||| ||| Sbjct 291593 ATACCGCCCCTCAGACGCAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 291652 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||||||| ||||| || || |||| || | ||| ||||| || Sbjct 291653 GAGAGGGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGG 291712 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| || || ||||| || | | |||| ||||||| ||| ||| Sbjct 291713 GGAATGCCTTCCTTATCCTGGATCTTAGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCG 291772 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || |||||||| || || || ||||| ||||||||| Sbjct 291773 ACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATG 291823 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | || || ||||||||| ||||| || Sbjct 291170 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGTTTGCCG 291229 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| | ||| || ||||||||||| ||||| ||||| || Sbjct 291230 GCAAAGATCAGCCTCTGCTTGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTG 291289 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| ||| ||||| |||| ||| | || |||||||| || || Sbjct 291290 ACGTTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 291349 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 291350 TTGACGAAGATCTGCAT 291366 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 |||||||| | || | || || | ||| | || || || || || || ||||| ||| Sbjct 291365 ATACCGCCCCTCAGACGCAGGACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCG 291424 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||||||| ||||| || || |||| || | ||| ||||| || Sbjct 291425 GAGAGGGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGG 291484 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| || || ||| | | |||| ||||||| ||| || Sbjct 291485 GGAATGCCTTCCTTGTCCTGGATTTTAGCTTTCACGTTCTCAATGGTGTCGCTGGGCTCA 291544 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || ||||| || || || || || || |||||||| Sbjct 291545 ACCTCCAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 291594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420103605986568