Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq265 471 8e-128 seq2005 127 4e-24 seq1140 109 1e-18 seq714 96.9 7e-15 >seq265 Length=606166 Score = 471 bits (522), Expect = 8e-128 Identities = 1087/1618 (67%), Gaps = 56/1618 (3%) Strand=Plus/Plus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 || || |||| | ||||||||| | | ||| | ||| ||||||| ||| ||||| Sbjct 295582 GATCCGTTGTTGCCGATGAGCTTGTTCTTCATCTCTTCGCTCCACAGCCCCT---GCTCC 295638 Query 244070 ---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 || | | || ||| || ||||| | |||||||||||| || || || | ||| Sbjct 295639 GTCAGGTCTTTGAGCAGATGAGGATTCACGATCTGAAACTCTCCAGAGAGGACTCTGCGG 295698 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| ||||||| || | ||||| ||| |||||||||| ||||| || ||| Sbjct 295699 GTGTAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTG 295758 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 || || ||||| || | || |||||| |||||||||||||| || | ||| Sbjct 295759 GAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTC 295818 Query 244247 AGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATG 244306 | | ||| ||||||||| ||| || ||| || || |||||||| Sbjct 295819 TCTTTCAGCAGCTTCCAGTCCAACA-----GATCGGTGGGCGTCTTCT----CCCACATG 295869 Query 244307 TCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCG 244366 || |||| || | ||||||||||| || ||| ||||| ||| |||||| ||| | Sbjct 295870 TCGTACTGGAGGATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGA-G 295928 Query 244367 CGCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCAT 244425 | | | |||||||| |||||| | || ||||||||||||||||||||||| || || Sbjct 295929 CTCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAATATTTG 295988 Query 244426 CTTGTTCATGTCGCGG-GCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGT 244484 |||||| | || | |||| | || || ||| | ||||| |||||| | | Sbjct 295989 GATGTTCA-GCAGCTGCGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCAT 296047 Query 244485 CGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTT 244544 | |||| || || ||||| || || || || ||||| ||||||||||| | |||| Sbjct 296048 CCGCCAAACCTTGAACGCCAATTCCTATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTT 296107 Query 244545 CGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA-TGCGG 244603 ||||||| || || ||||| ||||| | |||||| | ||| | ||| | | || Sbjct 296108 CGGGCACTGGATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTTTGACGATGACTTTGG 296167 Query 244604 ACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTC 244663 | ||| || || | |||||| | || | ||| | | || Sbjct 296168 TC-ACGGATGCTAGTTTTTTAAAGTCAAAA--GTCCG----CTCAGGGGTG--------- 296211 Query 244664 ACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTG 244723 || || ||||||||||| | |||||| || ||||| || ||||| || | ||||| Sbjct 296212 ACGTACATGTTGAGGGCGATGGAGGCCAGATTACAGACCGCTACCTCGTCGTCGCTGGTG 296271 Query 244724 TACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTG 244783 || | || || || ||||||||||| |||| ||||| |||||||| | ||| || ||| Sbjct 296272 TATTCAACGATTTCTGTGCAGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTG 296331 Query 244784 GACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCG 244843 ||| |||||||||||| ||||| |||||| | ||| ||||| || ||||| Sbjct 296332 CTCTTTCGGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCGGTTTCTGTCTGGGAC 296391 Query 244844 ACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAG-CCTTGCCCTCTGC 244902 ||| | | || ||| | | | |||||| ||| | || | || | ||||| Sbjct 296392 TCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCACAC-GCTTGACCCTCCCCTCCTT 296450 Query 244903 CTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA 244962 ||| || ||||| || ||| ||||| ||||| |||||| || ||||| || Sbjct 296451 CTCATATGAAGTGTAGAGCTTCTCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGACA 296510 Query 244963 CGACGCCGGGCACATGAGACTCCACTC---GCCGCCGTCCTTGACCCTCTGCATGAAGAG 245019 | || ||||| ||| ||| || | || ||| || |||| |||||| | Sbjct 296511 CTCATTGGGACACATCAGAGACCAGTCTTGGTTGCTTTCC---ACTCTCTTCATGAACAA 296567 Query 245020 GTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTT 245079 |||||||||||| ||||| | ||| ||||| |||| ||||||||| ||| || ||||| Sbjct 296568 GTCGGGGATCCACAGGGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTT 296627 Query 245080 CTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAG 245139 |||| ||||||||| |||||||| ||||| | |||||| ||||||| ||| | |||| Sbjct 296628 CTTCTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAA 296687 Query 245140 GGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATGC 245198 ||| ||||| | |||||||| |||||||| || | | | || | |||| | | | Sbjct 296688 GGCTCCGGGTCTTTTGTTGCCGCCCTGGTCGACATAACGTGCCGTG-TTGTTGTAAACTC 296746 Query 245199 GCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGC 245258 ||| | || |||| ||||| |||| |||||| ||||| |||||| ||| | Sbjct 296747 TCAGCATGGGGACTAACCCGTTTGAGTTGCCGTTTGTGCCGGCAATGTAGCTCCCCGTTG 296806 Query 245259 CCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGC 245318 |||| | ||||| | || ||| | ||| || || ||| ||||||||||| || Sbjct 296807 ATCTGATGCAGCTGACCGCCACGCCGATTCCTCCAGCCGACTTTGAGATGAGGGCACACT 296866 Query 245319 TCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGG 245378 ||| | ||||| ||||| || |||||||| ||||||| |||||| |||||| Sbjct 296867 GCTTCAGAGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGC 296926 Query 245379 AGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGT 245438 ||||||||| ||| || | | | | ||||| ||||| || ||||||||| || Sbjct 296927 TGGACAGCTGAGGCCTGTTGGTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAACC 296986 Query 245439 AGCGGCT-CGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATC 245497 | | || ||| || | ||| |||| | |||||||||| | |||||| Sbjct 296987 A-CTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGATG 297045 Query 245498 TGCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCT----CGGGTCC 245553 | || ||||||||| |||||||||| || | || | || || Sbjct 297046 CCAACGGAAACCCTCATGAGCATGTGCTGGGG----ACGTTCGGCCACTTTGCCGTTGAT 297101 Query 245554 CTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCG 245611 ||| |||| |||||| ||||| || |||||||| |||||| | |||| |||||| Sbjct 297102 CTTCAGCAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAGTCG 297159 >seq2005 Length=666128 Score = 127 bits (140), Expect = 4e-24 Identities = 106/127 (83%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| ||||| ||||||| ||||| ||||||||||| || ||||||| ||||||||| Sbjct 130725 TGGTGGCCTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCT 130784 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| | ||||||||| || |||||||| ||||| ||||||||||| Sbjct 130785 GGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 130843 Query 42825 GACGAGG 42831 ||||||| Sbjct 130844 GACGAGG 130850 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||| |||||||| ||||||||||| || ||||||| ||||||||||| ||||||||||| Sbjct 132588 CCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGAAAGACCAACTTCTTCGAGAAGCG 132647 Query 43130 CGTCGCCGACTACCAG 43145 |||| || |||||| Sbjct 132648 GGTCGGAGAGTACCAG 132663 >seq1140 Length=734468 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 |||||||||||||| || ||||| | ||| ||||| ||||||| || ||||| ||| Sbjct 319430 ACCTGAAACTCTCCTGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCAATG 319489 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||||||||| ||||| || ||| || || |||||||| | || ||||| Sbjct 319490 GACTCGTTGTTGCCCAGGATCTGTGCAGTGGAAGCTGTGGGCATGGGGGCCAAGAGCAGG 319549 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||||||||| || ||||| Sbjct 319550 CTGTTCCTCACACCATGCCT 319569 Score = 98.7 bits (108), Expect = 2e-15 Identities = 157/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCG---TCGCGCTGGGC 244374 || ||||||||||||||| ||| ||||||| ||| || ||| || |||| || Sbjct 319822 CACCCCCTTGCTGACGGGAGAGCCGGCGTAGGTTTCGTAAGGGCCGAGCTC-CGCT--GC 319878 Query 244375 CAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCAT 244434 ||||| |||||| | || |||||||||| ||||||||||| |||||| |||| | Sbjct 319879 CAGCTCACAGCTGGCCTCCAGGGCGGCGTGATAGATGGTCTCAAAGATCTGAATGTTGA- 319937 Query 244435 GTCGCGGGCCTTGCCGCAGGTGAAGGGGAT-GCCCATCATCATGAAGACGTCGGCCAGTC 244493 | || || ||| | | || |||| | ||||| |||||| | |||||||| | Sbjct 319938 GCAGCTGGGCTTCTTGGCTTTCAAATGGATAACGCATCAGGATGAAGGCATCGGCCAGGC 319997 Query 244494 CCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA 244533 |||| || || || || || || ||||| ||| |||| || Sbjct 319998 CCTGGACACCAATTCCAATCGGCCTGTGGCGCATGTTTGA 320037 Score = 93.3 bits (102), Expect = 8e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||||| || ||||| ||||| ||||| ||| | |||||||||||||||| ||| || Sbjct 320375 GTGTACTCTACGATCTCTGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTCTGCTGG 320434 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 ||| ||| | |||||||| |||||||| |||||| Sbjct 320435 TTGCTCTTCCCATTGCAGGCATCCTTGTAAAGCATG 320470 >seq714 Length=827726 Score = 96.9 bits (106), Expect = 7e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| || || || || | || || ||||| ||||||||||| ||| | ||||| Sbjct 573858 GGGGAGAGACTCGTGGCTTTCGCAGCAGTGGAGGGTATCTTCTTCTCAGGCTCATTCGCT 573799 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 |||||| ||||||||| ||| | | |||||||| || |||||||| || || || Sbjct 573798 GCCATCTATTGGCTCAAGAAGAGAGGGCTAATGCCCGGTCTTACCTTCTCCAATGAGCTG 573739 Query 42816 ATCAGCAGGGACGAGG 42831 || |||||||| |||| Sbjct 573738 ATTAGCAGGGATGAGG 573723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944268209300640