Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1120 86.0 5e-12 seq241 86.0 5e-12 seq638 84.2 2e-11 >seq1120 Length=422497 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/88 (84%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 114331 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGG 114387 || |||||||| ||||||||||| |||| |||||||||||||| | | |||| |||| Sbjct 397462 TGGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTTGGAGCGATCAAAGG 397521 Query 114388 AACCAAAACTGATATATTGAGCCATTCG 114415 ||||| ||||||| || ||||||||||| Sbjct 397522 AACCATAACTGATTTAATGAGCCATTCG 397549 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/88 (84%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 115528 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGG 115584 || |||||||| ||||||||||| |||| |||||||||||||| | | |||| |||| Sbjct 397462 TGGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTTGGAGCGATCAAAGG 397521 Query 115585 AACCAAAACTGATATATTGAGCCATTCG 115612 ||||| ||||||| || ||||||||||| Sbjct 397522 AACCATAACTGATTTAATGAGCCATTCG 397549 >seq241 Length=920797 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/88 (84%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 115528 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGG 115584 || |||||||| ||||||||||| |||| |||||||||||||| | | |||| |||| Sbjct 137758 TGGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTTGGAGCGATCAAAGG 137699 Query 115585 AACCAAAACTGATATATTGAGCCATTCG 115612 ||||| ||||||| || ||||||||||| Sbjct 137698 AACCATAACTGATTTAATGAGCCATTCG 137671 Score = 86.0 bits (94), Expect = 5e-12 Identities = 74/88 (84%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 114331 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGG 114387 || |||||||| ||||||||||| |||| |||||||||||||| | | |||| |||| Sbjct 137758 TGGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTTGGAGCGATCAAAGG 137699 Query 114388 AACCAAAACTGATATATTGAGCCATTCG 114415 ||||| ||||||| || ||||||||||| Sbjct 137698 AACCATAACTGATTTAATGAGCCATTCG 137671 >seq638 Length=1997749 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/87 (84%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 114331 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGG 114387 || |||||||| ||||||||||| |||| |||||||||||||| | | |||| |||| Sbjct 327865 TGGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTTGGAGCGATCAAAGG 327924 Query 114388 AACCAAAACTGATATATTGAGCCATTC 114414 ||||| ||||||| || |||||||||| Sbjct 327925 AACCATAACTGATTTAATGAGCCATTC 327951 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/87 (84%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 115528 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGG 115584 || |||||||| ||||||||||| |||| |||||||||||||| | | |||| |||| Sbjct 327865 TGGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTTGGAGCGATCAAAGG 327924 Query 115585 AACCAAAACTGATATATTGAGCCATTC 115611 ||||| ||||||| || |||||||||| Sbjct 327925 AACCATAACTGATTTAATGAGCCATTC 327951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397033297063228