Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Larimichthys_20crocea_20[refseq_20GCF_5F000972845.1_202015-04-21] 6,014 sequences; 678,938,134 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1532 149 1e-30 seq1833 145 2e-29 >seq1532 Length=669350 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||||| ||| || || |||||||| ||||||| ||| ||||| || ||| Sbjct 291383 AGGACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGAGAGGGTGCGGCCATCT 291442 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | ||||| || || |||||||| | ||| || | || || ||||| || ||| Sbjct 291443 TCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 291502 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 |||||||| ||||||||||| || || | ||||| | || || || || ||||| ||| Sbjct 291503 TGGATTTTAGCTTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTC 291562 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||||||||| |||||||| Sbjct 291563 TTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 291594 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||||| ||| || || ||||| || ||||||| ||| ||||| || ||| Sbjct 291611 AGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 291670 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | ||||| || || |||||||| | ||| || | || || ||||| |||||| Sbjct 291671 TCAAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 291730 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || || ||||| || || | ||||| | || || || || ||||| ||| Sbjct 291731 TGGATCTTAGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTC 291790 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || |||||||| || |||||||| Sbjct 291791 TTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 291822 Score = 125 bits (138), Expect = 2e-23 Identities = 146/195 (75%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||| ||||| || ||||| | ||||| || || ||| Sbjct 291176 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAG 291235 Query 288343 ATCAGACGCTG-TTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | ||| ||| || ||| || ||||| || |||||||| || || || || Sbjct 291236 ATCAGCCTCTGCTTG----TCAGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGAC 291291 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || || | ||||| | || || || || ||||| ||||| ||||| || ||||| Sbjct 291292 GTTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTT 291351 Query 288459 GACGAATATCTGCAT 288473 |||||| |||||||| Sbjct 291352 GACGAAGATCTGCAT 291366 >seq1833 Length=1844611 Score = 145 bits (160), Expect = 2e-29 Identities = 162/215 (75%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||| | ||| || || ||||| || ||||||| ||| ||||| || || Sbjct 459924 AGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 459865 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTA 288378 || | ||| ||||| |||||||| |||||||| || ||||| ||| || || ||| Sbjct 459864 TCAAGTTGCTTTCCAGCGAAGATGAGACGCTGCTGG---TCTGGAGGGATGCCCTCCTTA 459808 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| || || |||||||| || || | ||||| | || || || || ||||| Sbjct 459807 TCCTGGATCTTAGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 459748 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| |||||||| ||||| || || |||||||| Sbjct 459747 GTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 459713 Score = 118 bits (130), Expect = 3e-21 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||| | ||| || || ||||| || ||||||| ||| ||||| || || Sbjct 459468 AGCACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 459409 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTA 288378 || | ||||| || || ||||| |||||||| || ||||| ||| || || ||| Sbjct 459408 TCGAGCTGTTTGCCGGCAAAGATGAGACGCTGCTGG---TCTGGAGGGATGCCCTCCTTA 459352 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| || || || ||||| || || | ||||| | || || || | ||||| Sbjct 459351 TCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAAGGTGATG 459292 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || |||| ||||| || || |||||||| Sbjct 459291 GTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 459257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179563502467492